PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011091225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 134aa MW: 15127 Da PI: 9.657 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.7 | 2.2e-21 | 25 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+ +g +r +lg+f+taeeAa+a+++a+ kl+g+ XP_011091225.1 25 RYRGVRQRP-WGKFAAEIRDPTRQG--ARLWLGTFDTAEEAARAYDKAAFKLRGH 76 6********.**********96544..**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-15 | 25 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-24 | 25 | 84 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.08 | 25 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-39 | 25 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.29E-32 | 25 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.1E-33 | 25 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-12 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-12 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MEGSSSSSSR GKAMQEREEK KDKVRYRGVR QRPWGKFAAE IRDPTRQGAR LWLGTFDTAE 60 EAARAYDKAA FKLRGHLAIL NFPNEYYSQL AIPPYNPTFS SSSSSSGGQE KIELVCLDNS 120 LLDEMLESSE KKKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-29 | 25 | 86 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011091225.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091225.1 | 3e-95 | ethylene-responsive transcription factor ERF098-like | ||||
Swissprot | Q9LTC5 | 5e-43 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2Z7B4V2 | 4e-58 | A0A2Z7B4V2_9LAMI; Uncharacterized protein | ||||
STRING | GLYMA20G34560.1 | 1e-52 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-33 | ERF family protein |
Publications ? help Back to Top | |||
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