PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091032.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family HSF
Protein Properties Length: 324aa    MW: 37169.8 Da    PI: 5.6896
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.83.2e-37121042103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+ ++d+++++++sws+ +nsf+v+d+++fak++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++
  XP_011091032.1  12 FLSKTYDFVDDPNTNHIVSWSKGNNSFIVWDPQNFAKNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQRHLLKN 97 
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     ikr+k++
  XP_011091032.1  98 IKRRKTA 104
                     ****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.62E-368101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-408101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-628101IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3212101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-191235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-195062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEGLHETGPP PFLSKTYDFV DDPNTNHIVS WSKGNNSFIV WDPQNFAKNL LPRYFKHNNF  60
SSFVRQLNTY GFRKVDPDKW EFANEGFLRG QRHLLKNIKR RKTASNFQAS NQGLESCVEV  120
GSFGLDAEID RLRRDKQVLM AELVKLRQLQ QNTNSHLKEM EQRLKGTELK QRQTMSFLAK  180
ALKNPTFLQQ MVQQKDRMKE LEDAIGKKRR KRIDLGSSSA IGDIYVKIEP EEFGDKISGF  240
DVELERLAMS MEGPSMNMED QMLHNDDHSD NIDKNLISAE KPFDEGFWGG IEDEIGTFGV  300
GGHDLDEEVD AFTDQLGFLG SSPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-281010418123Heat shock factor protein 1
5d5u_B5e-281010327131Heat shock factor protein 1
5d5v_B5e-281010327131Heat shock factor protein 1
5d5v_D5e-281010327131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100LKNIKRR
2206210KKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963082e-32JN896308.1 Glycine max heat shock transcription factor HSFA6b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552814.10.0heat stress transcription factor A-2c
SwissprotQ9LUH81e-110HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2G9GL711e-174A0A2G9GL71_9LAMI; Heat shock transcription factor
STRINGcassava4.1_029306m1e-134(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-113heat shock transcription factor A6B