PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090931.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C3H | ||||||||
Protein Properties | Length: 496aa MW: 52082.4 Da PI: 7.769 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.8 | 3.1e-12 | 61 | 86 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_011090931.1 61 DEPDCIYYLRTGFCGYGNRCRFNHPR 86 6899********************96 PP | |||||||
2 | zf-CCCH | 37.4 | 4.3e-12 | 108 | 132 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_011090931.1 108 QPVCQYYMRTGMCKFGASCKYHHPK 132 689********************96 PP | |||||||
3 | zf-CCCH | 35.2 | 2.1e-11 | 153 | 178 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ XP_011090931.1 153 GEKECSYYVKTGQCKFGVTCKFHHPQ 178 7899********************97 PP | |||||||
4 | zf-CCCH | 37.4 | 4.4e-12 | 318 | 344 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++Ck++H+p XP_011090931.1 318 PGQPECQYYLKTGDCKFGATCKYHHPP 344 5789*********************97 PP | |||||||
5 | zf-CCCH | 36.7 | 7.3e-12 | 366 | 390 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC+++a++G Ck+G++CkF H++ XP_011090931.1 366 APLCSHYAQNGVCKFGPSCKFDHPM 390 68*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.558 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-5 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 63 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 65 | 86 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.507 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 108 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.9E-9 | 108 | 132 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 110 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.389 | 151 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 151 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-6 | 153 | 179 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-9 | 153 | 178 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-4 | 157 | 177 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.826 | 317 | 345 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 319 | 344 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-5 | 321 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-4 | 323 | 344 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.309 | 363 | 391 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-7 | 363 | 390 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.94E-6 | 366 | 391 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-9 | 366 | 390 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 368 | 388 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MERYSGTQAM EAVQVDPVAE WAAPVDPVAE WAAPGGETGL EEPMWQLGLG GGPESYPERP 60 DEPDCIYYLR TGFCGYGNRC RFNHPRDRSM AMGALRAGGG EYPERAGQPV CQYYMRTGMC 120 KFGASCKYHH PKHGVGSSAP VTLNVYGYPL RPGEKECSYY VKTGQCKFGV TCKFHHPQPA 180 GIQVPAPPGP GAGPLAAPAG YPSVQSPSGQ SSQQYGVIQG NWPVARPAML PGSYVPGSYG 240 PMLFPPGVVP VPGWTPYPAP VSPVASSSAQ PTVGPGPIYG LTQLSPSATA YTGPFLSVTS 300 SAGPSSSSQK EHPFPERPGQ PECQYYLKTG DCKFGATCKY HHPPEWSAPK INFVLSPMGL 360 PLRPGAPLCS HYAQNGVCKF GPSCKFDHPM RILSYSPSAS SLTDMPVAPY PVGSTNATLA 420 PSTSSSDLRP ELLSGYNKDA FSWQMSSMNS SSAAGGSLFS TSGAVPQSSA QQSGQGSISS 480 SGGSTISRGG EVHASS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090931.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090931.1 | 0.0 | zinc finger CCCH domain-containing protein 32 | ||||
Swissprot | Q84W91 | 1e-165 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A2G9GS85 | 0.0 | A0A2G9GS85_9LAMI; CCCH-type Zn-finger protein | ||||
STRING | Migut.G00186.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2412 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-121 | C3H family protein |