PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090782.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YC | ||||||||
Protein Properties | Length: 234aa MW: 26027.5 Da PI: 5.2677 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 176 | 3.8e-55 | 57 | 160 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q i+++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdfl XP_011090782.1 57 QLQNFWATQyeeIDQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFL 151 89*****99888999******************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_011090782.1 152 VDIVPREDL 160 ******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.93E-34 | 47 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-22 | 79 | 142 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.2E-38 | 80 | 157 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEQQGNGPTP GLSAPAPAAS TQSTQAAGIS ASPAQMAQHQ LAYQHIHQQQ QQQLQQQLQN 60 FWATQYEEID QVTDFKNHSL PLARIKKIMK ADEDVRMISA EAPVVFARAC EMFILELTLR 120 AWNHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPREDL KDEVLASMPR GALPVGAPTE 180 GLPYYYMPPQ PTPPVGAPGM FVGKPVDPAI YGQQARPYMA QQMWPQQPQP PADS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-61 | 64 | 157 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 135 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090782.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090782.1 | 1e-172 | nuclear transcription factor Y subunit C-3-like isoform X2 | ||||
Refseq | XP_020553138.1 | 1e-172 | nuclear transcription factor Y subunit C-3-like isoform X2 | ||||
Refseq | XP_020553139.1 | 1e-172 | nuclear transcription factor Y subunit C-3-like isoform X2 | ||||
Refseq | XP_020553140.1 | 1e-172 | nuclear transcription factor Y subunit C-3-like isoform X2 | ||||
Swissprot | Q8L4B2 | 4e-82 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2G9HXI8 | 1e-135 | A0A2G9HXI8_9LAMI; CCAAT-binding factor, subunit C (HAP5) | ||||
STRING | XP_009791101.1 | 1e-120 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 4e-72 | nuclear factor Y, subunit C9 |