PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090520.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ERF
Protein Properties Length: 322aa    MW: 35714.3 Da    PI: 7.1502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.4e-21123173256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  XP_011090520.1 123 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 173
                     59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.46E-34122182No hitNo description
Gene3DG3DSA:3.30.730.101.7E-32123181IPR001471AP2/ERF domain
SMARTSM003803.1E-38123186IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-23123181IPR016177DNA-binding domain
PROSITE profilePS5103223.235123180IPR001471AP2/ERF domain
PfamPF008471.6E-14124173IPR001471AP2/ERF domain
PRINTSPR003672.9E-11124135IPR001471AP2/ERF domain
PRINTSPR003672.9E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAAAIDMYSS SSCQVLSMDP FREELMQALQ PFMKSAAASP PYTALSQMAY DQTVGGIGLN  60
QISPSQMLQI QAQFQLQQQE LQHSQLTSKS SQSHHQQSSF SSFLGPKPVL MKQPGSPSKP  120
TKLYRGVRQR HWGKWVAEIR LPKNRTRLWL GTFDTAEEAA LAYDKAAYKL RGEFARLNFP  180
HLKHQLFQEF SGFKPLHSSV DAKLQAICQS LADSKKQGNS RNPCFVAKVE PLTETGCPKL  240
EKASDDSSNF RFKDLGSSET VKVETSVSSS AYPSPSDEVS SAGSGSPESC ITFLDFPEPS  300
FDECDNFMLQ KYPSVEIDWA AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22122180160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-21122180463ATERF1
3gcc_A1e-21122180463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090520.10.0ethylene-responsive transcription factor ERF060
TrEMBLA0A2G9HN351e-118A0A2G9HN35_9LAMI; Uncharacterized protein
STRINGMigut.L00108.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-61ERF family protein