PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090472.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

SRS

Protein Properties

Length: 432aa MW: 45140 Da PI: 8.555

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.7	1.1e-66	147	307	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsstklssaes 96 +g+++CqdCGnqakkdC+h+RCRtCCksrg+dCathvkstWvpaa+rrerq + ++ + a +s++++ +k++r s++++++s+t++s++++ XP_011090472.1 147 MGATTCQDCGNQAKKDCSHRRCRTCCKSRGYDCATHVKSTWVPAARRRERQLMGGNP-AAAGSSQSTSGTKKPRLGgASQTTTTASHTSTSNTTP 240 6889********************************************8777666.455566677788888876467778888999*** PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++etss lP +v+++avf+cvrv+++ddge+e+aYq++v igGhvfkG+LydqG+e XP_011090472.1 241 PRSFETSSshqdasfkdsLPGQVRAPAVFKCVRVTALDDGEDEYAYQAVVRIGGHVFKGFLYDQGVE 307 **999******************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.1E-61	149	307	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-26	151	193	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.7E-29	259	306	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MWSSAAASTR HINCGLPPEF FFVAPASSFQ HHHQEAAAAA ATTINFDPHS LNASNAIGVG 60 VGVGVIPLLT ATPCVTQPSI AGGAAADEDL LNNARSRAAG GGMQLWQHQQ GQNSYNLKKP 120 MILEHTNLLQ TGSGGSSGGG IGGSSSMGAT TCQDCGNQAK KDCSHRRCRT CCKSRGYDCA 180 THVKSTWVPA ARRRERQLMG GNPAAAGSSQ STSGTKKPRL GGASQTTTTA SHTSTSNTTP 240 PRSFETSSSH QDASFKDSLP GQVRAPAVFK CVRVTALDDG EDEYAYQAVV RIGGHVFKGF 300 LYDQGVEGRD GLPNISELHL GGGGGGNGGG RNGASSSPPV LDPSDIYAAS GGGLLGGSSY 360 DQSLHVGVFE LHPSTLAHVE MMTRMRRGLG FSRGKVHLGL INGAEETLNK KLLNFSSYNN 420 WNSSRQEYAY SL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MWSSAAASTR HINCGLPPEF FFVAPASSFQ HHHQEAAAAA ATTINFDPHS LNASNAIGVG  60
VGVGVIPLLT ATPCVTQPSI AGGAAADEDL LNNARSRAAG GGMQLWQHQQ GQNSYNLKKP  120
MILEHTNLLQ TGSGGSSGGG IGGSSSMGAT TCQDCGNQAK KDCSHRRCRT CCKSRGYDCA  180
THVKSTWVPA ARRRERQLMG GNPAAAGSSQ STSGTKKPRL GGASQTTTTA SHTSTSNTTP  240
PRSFETSSSH QDASFKDSLP GQVRAPAVFK CVRVTALDDG EDEYAYQAVV RIGGHVFKGF  300
LYDQGVEGRD GLPNISELHL GGGGGGNGGG RNGASSSPPV LDPSDIYAAS GGGLLGGSSY  360
DQSLHVGVFE LHPSTLAHVE MMTRMRRGLG FSRGKVHLGL INGAEETLNK KLLNFSSYNN  420
WNSSRQEYAY SL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090472.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552557.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	2e-85	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A022R8A6	1e-155	A0A022R8A6_ERYGU; Uncharacterized protein
STRING	Migut.N02371.1.p	1e-156	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-73	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]