PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 351aa MW: 38081.2 Da PI: 6.4224 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.5 | 1e-19 | 271 | 305 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+tkTp+WR gp g+ktLCnaCG++y++ +l XP_011090418.1 271 CSHCGVTKTPQWRAGPLGSKTLCNACGVRYKSGRL 305 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.9E-17 | 265 | 319 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.242 | 265 | 301 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.18E-15 | 267 | 328 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.2E-15 | 269 | 303 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.03E-14 | 270 | 318 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 271 | 296 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-17 | 271 | 305 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MLYRTHHHPL LFTFNPFSHS SSALSSHLLP SPRLQEMEAV QGDSRGGLVP ETPAKTAVPL 60 DECLGGNGDD FFVDELLDFS NGYSETEEQP PPEESQEIEQ GKDKNCCVSQ EKETAPPEDS 120 SLSGKDDFGS LQESELSFQA EGLESLEWLS HFVEDSFSDY SLAGKLPPKP TENSSGTARE 180 QPCFTTPVQT KARTKRARSG VRVWPVLSPS FTETSTSSSS STSSTTSFPQ SSLGLVQTQT 240 GESSLGKTPP KKQKRKPADG GGGGAAQPRR CSHCGVTKTP QWRAGPLGSK TLCNACGVRY 300 KSGRLLPEYR PACSPTFSSE LHSNNHRKVL EMRRKKEAAE TTGLPPPVQS F |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 249 | 256 | PKKQKRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090418.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090418.1 | 0.0 | GATA transcription factor 5 | ||||
Swissprot | Q9FH57 | 6e-67 | GATA5_ARATH; GATA transcription factor 5 | ||||
TrEMBL | A0A2G9HGJ9 | 1e-137 | A0A2G9HGJ9_9LAMI; GATA transcription factor | ||||
STRING | Migut.L00033.1.p | 1e-118 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 5e-67 | GATA transcription factor 5 |