PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090366.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 367aa    MW: 41133.9 Da    PI: 6.0101
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090366.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.4e-152572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
   XP_011090366.1 25 KGLWSPEEDEKLMRYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 72
                     678*******************************************97 PP
2Myb_DNA-binding51.72e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++
   XP_011090366.1  78 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 121
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.422072IPR017930Myb domain
SuperFamilySSF466892.81E-2823119IPR009057Homeodomain-like
SMARTSM007177.0E-112474IPR001005SANT/Myb domain
PfamPF002491.5E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-232679IPR009057Homeodomain-like
CDDcd001674.86E-92872No hitNo description
PROSITE profilePS5129425.49773127IPR017930Myb domain
SMARTSM007174.4E-1677125IPR001005SANT/Myb domain
PfamPF002494.5E-1578121IPR001005SANT/Myb domain
CDDcd001673.34E-1180123No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2680127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MRKPADASAA GKNSHPIDGA QKLRKGLWSP EEDEKLMRYM LTNGQGCWSD VARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSPQEEELII HLHSILGNRW SQIAARLPGR TDNEIKNFWN  120
STVKKRLKTS SSSSIISPNT SDSSIDPIDH QGMGDHQGLL VTMQENNIIM AMFMDSSSSS  180
SSTSVNLSSS SSSSLSTMHH TPTISTVNVH PFPTLHHMNP NYMPPSEGLY SNVQPYTAQV  240
EIGNESSAYR YNNAIFGGDG NVCMEGHHHI FDIPPLASTN TIEEKSNTKN LVELRSGSSN  300
NIVHNMNNIV LNQCNNNINN MIKVENEEGF GGYWEGEQEL RVEEEYWDLE ELMKDVPSFP  360
FLDFQVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27191291110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090366.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090366.10.0transcription factor MYB46
TrEMBLA0A2G9G7D81e-129A0A2G9G7D8_9LAMI; Transcription factor, Myb superfamily
STRINGXP_009609673.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-71myb domain protein 46