PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090295.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 795aa MW: 85583.1 Da PI: 6.1795

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090295.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	341.1	2e-104	434	794	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 v++L+++Ae v++g+ laq +Larl+++ sp g+p++R+a+y +eAL+ l+ + +++ + ++s+ + + ++ a+k fse+sP+++f+++ XP_011090295.1 434 VDQLYKAAELVQTGNPVLAQGILARLNHQLSPIGKPFHRAAFYCKEALQLLLHTNNNNVNPST--ASSSPFSLIFKIGAYKSFSEISPLIQFANF 526 789************************************************9555555333..22222349****************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t+Nqa+le +eg +r+Hi+Dfdi+ G+QW++L+q+La R++g+psl+iT+++sp+++++ el t+e+L +fA+e+++ fef+++ ++l++ XP_011090295.1 527 TCNQALLEVLEGFDRIHIVDFDIGFGGQWASLMQELALRSGGAPSLKITALASPSTHDQLELGLTRENLIQFASEINIAFEFEAMSIDSLDSG-S 620 ********************************************************************************877777766.6 PP GRAS 192 eeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 ++L + +++Ea+aVnl + +l + ++s++ vL++vk+lsP++vv v++ +d+++ +F++++++al+ +s l++sl+a + + +k XP_011090295.1 621 WSLpfHASENEAVAVNLPI--VSLANCQLSVPL----VLRFVKQLSPRIVVSVDRGCDRTDLPFANHIIHALHSHSNLLESLDAV-NVNMDSLQK 708 7772255559999999998..555544555555....*****************************************655.456688899 PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er+ll++ i+++v+ + + e+ ++Wr+ + ++GF+pv++s+++++qa++++++++++g++ve+++ slvl+W++++L+s+SaWr XP_011090295.1 709 IERFLLQPGIEKIVMGRFHS----PEKTQHWRSLFLSSGFSPVTFSNFTESQAECVVKRTPVRGFQVEKRQSSLVLCWQRKELISASAWR 794 **********987666....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.371	407	774	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-102	434	794	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence Send to blast
MKGMPLPFDF EGKGVLDLEL IVKNKSFIAD SSAAVSSYFS KKNCFLNNSF GEPTSVLDSA 60 RISSRPTSSS TLSSSHGGGG GSTGGGGGAA STDTAGVAAV SDTNPSPKWQ QDSTTATSSN 120 AGGANSELLP IPPSLEIGTA GGGSGGNGEK FAMEDWESVL SESVAVSPSQ EQSILRWIMG 180 DVEDPAMGSL NKVLQIGGGA GGVSAAAEFE FSGGFGVGDQ GFGGDQYGTA FMPTVPSFPN 240 NNRSSAEKIG LASNPISSNL PTNFKFPPNS QNITHPSSLS NNLDAIALHH QNSFDSSAEM 300 RPPIFNSQLL INQQQTQQAQ NPSFFFPLSY AQQQEQNLLM PPQAKRHNSG GPVSGGLEPG 360 SQISKGSFAD TAEQELFMGR QQLHLQQQPL PHQLHLLPHY MQQRPMGPGQ KPKIGGGDEL 420 GHCHQQQQQQ QAIVDQLYKA AELVQTGNPV LAQGILARLN HQLSPIGKPF HRAAFYCKEA 480 LQLLLHTNNN NVNPSTASSS PFSLIFKIGA YKSFSEISPL IQFANFTCNQ ALLEVLEGFD 540 RIHIVDFDIG FGGQWASLMQ ELALRSGGAP SLKITALASP STHDQLELGL TRENLIQFAS 600 EINIAFEFEA MSIDSLDSGS WSLPFHASEN EAVAVNLPIV SLANCQLSVP LVLRFVKQLS 660 PRIVVSVDRG CDRTDLPFAN HIIHALHSHS NLLESLDAVN VNMDSLQKIE RFLLQPGIEK 720 IVMGRFHSPE KTQHWRSLFL SSGFSPVTFS NFTESQAECV VKRTPVRGFQ VEKRQSSLVL 780 CWQRKELISA SAWRC

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence Send to blast

MKGMPLPFDF EGKGVLDLEL IVKNKSFIAD SSAAVSSYFS KKNCFLNNSF GEPTSVLDSA  60
RISSRPTSSS TLSSSHGGGG GSTGGGGGAA STDTAGVAAV SDTNPSPKWQ QDSTTATSSN  120
AGGANSELLP IPPSLEIGTA GGGSGGNGEK FAMEDWESVL SESVAVSPSQ EQSILRWIMG  180
DVEDPAMGSL NKVLQIGGGA GGVSAAAEFE FSGGFGVGDQ GFGGDQYGTA FMPTVPSFPN  240
NNRSSAEKIG LASNPISSNL PTNFKFPPNS QNITHPSSLS NNLDAIALHH QNSFDSSAEM  300
RPPIFNSQLL INQQQTQQAQ NPSFFFPLSY AQQQEQNLLM PPQAKRHNSG GPVSGGLEPG  360
SQISKGSFAD TAEQELFMGR QQLHLQQQPL PHQLHLLPHY MQQRPMGPGQ KPKIGGGDEL  420
GHCHQQQQQQ QAIVDQLYKA AELVQTGNPV LAQGILARLN HQLSPIGKPF HRAAFYCKEA  480
LQLLLHTNNN NVNPSTASSS PFSLIFKIGA YKSFSEISPL IQFANFTCNQ ALLEVLEGFD  540
RIHIVDFDIG FGGQWASLMQ ELALRSGGAP SLKITALASP STHDQLELGL TRENLIQFAS  600
EINIAFEFEA MSIDSLDSGS WSLPFHASEN EAVAVNLPIV SLANCQLSVP LVLRFVKQLS  660
PRIVVSVDRG CDRTDLPFAN HIIHALHSHS NLLESLDAVN VNMDSLQKIE RFLLQPGIEK  720
IVMGRFHSPE KTQHWRSLFL SSGFSPVTFS NFTESQAECV VKRTPVRGFQ VEKRQSSLVL  780
CWQRKELISA SAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-34	448	794	18	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090295.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090295.1	0.0	scarecrow-like protein 6
TrEMBL	A0A2G9GWL5	0.0	A0A2G9GWL5_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400066799	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-151	GRAS family protein