PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YC | ||||||||
Protein Properties | Length: 273aa MW: 30371.6 Da PI: 4.4503 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 38 | 3.6e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ ++++v++ ++fdfl ++v + XP_011090223.1 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLNKGAKTVNSLHLKQCVQSFNVFDFLRETVSK 69 899*************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 9.1E-17 | 1 | 68 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.22E-18 | 1 | 71 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.4E-12 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYEITLNK GAKTVNSLHL KQCVQSFNVF 60 DFLRETVSKV PDLGGSDAVV EDRSATKRRK ISEDEEYANG DVSKRIYTLL WVFYALQHEI 120 GHTNNSGRSR GRGRVRSRGR GSRVVQRESI VQYEKIEDEP GISNQNGENQ KGRLGPSNNV 180 VGAADSRITG EKDAEKSVID IDLNVDLNES EESTLTLADI SSDSSIKTTL DLKHEDIPGW 240 SIEDVERMAI GPVQLANLNR GIDEEEEDYD EEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 5e-14 | 1 | 55 | 21 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 139 | RGRGRVRSRGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090223.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090215.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_011090217.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552391.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552392.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552393.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552394.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552395.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552396.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552397.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552398.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552399.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552400.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552401.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552402.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552403.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552404.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552405.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
Refseq | XP_020552406.1 | 0.0 | dr1-associated corepressor-like isoform X1 | ||||
TrEMBL | A0A2G9HP45 | 1e-102 | A0A2G9HP45_9LAMI; Class 2 transcription repressor NC2, alpha subunit (DRAP1) | ||||
STRING | Migut.N02403.1.p | 1e-88 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 1e-47 | NF-YC family protein |