PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090221.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YC | ||||||||
Protein Properties | Length: 288aa MW: 31948.6 Da PI: 4.8296 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59.2 | 8.8e-19 | 13 | 93 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ ++++v++ ++fdfl ++v + XP_011090221.1 13 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLNKGAKTVNSLHLKQCVQSFNVFDFLRETVSK 93 678*************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.0E-19 | 10 | 95 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.8E-26 | 10 | 79 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.5E-19 | 15 | 78 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MVGRVGGMRK KLDTRFPAAR IKKIMQADED VGKIAMAVPL LVSKALELFL QDLCDRTYEI 60 TLNKGAKTVN SLHLKQCVQS FNVFDFLRET VSKVPDLGGS DAVVEDRSAT KRRKISEDEE 120 YANGDVSKRI YTHEIGHTNN SGRSRGRGRV RSRGRGSRVV QRESIVQYEK IEDEPGISNQ 180 NGENQKGRLG PSNNVVGAAD SRITGEKDAE KSVIDIDLNV DLNESEESTL TLADISSDSS 240 IKTTLDLKHE DIPGWSIEDV ERMAIGPVQL ANLNRGIDEE EEDYDEEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-22 | 9 | 79 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 154 | RGRGRVRSRGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090221.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552407.1 | 0.0 | dr1-associated corepressor-like isoform X2 | ||||
TrEMBL | A0A2G9HP45 | 1e-118 | A0A2G9HP45_9LAMI; Class 2 transcription repressor NC2, alpha subunit (DRAP1) | ||||
STRING | Migut.N02403.1.p | 1e-104 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19490.1 | 6e-62 | NF-YC family protein |