PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011090221.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

NF-YC

Protein Properties

Length: 288aa MW: 31948.6 Da PI: 4.8296

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011090221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.2	8.8e-19	13	93	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ ++++v++ ++fdfl ++v + XP_011090221.1 13 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLNKGAKTVNSLHLKQCVQSFNVFDFLRETVSK 93 678*************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.0E-19	10	95	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.8E-26	10	79	IPR009072	Histone-fold
Pfam	PF00808	4.5E-19	15	78	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MVGRVGGMRK KLDTRFPAAR IKKIMQADED VGKIAMAVPL LVSKALELFL QDLCDRTYEI 60 TLNKGAKTVN SLHLKQCVQS FNVFDFLRET VSKVPDLGGS DAVVEDRSAT KRRKISEDEE 120 YANGDVSKRI YTHEIGHTNN SGRSRGRGRV RSRGRGSRVV QRESIVQYEK IEDEPGISNQ 180 NGENQKGRLG PSNNVVGAAD SRITGEKDAE KSVIDIDLNV DLNESEESTL TLADISSDSS 240 IKTTLDLKHE DIPGWSIEDV ERMAIGPVQL ANLNRGIDEE EEDYDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	9	79	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	154	RGRGRVRSRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011090221.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552407.1	0.0	dr1-associated corepressor-like isoform X2
TrEMBL	A0A2G9HP45	1e-118	A0A2G9HP45_9LAMI; Class 2 transcription repressor NC2, alpha subunit (DRAP1)
STRING	Migut.N02403.1.p	1e-104	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	6e-62	NF-YC family protein