PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 515aa MW: 56882.6 Da PI: 7.2549 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00099 | 81 | 98 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F ++ ++ H XP_011090189.1 81 TCENCGKEFVSWKSFLEH 98 6**************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 7.4 | 13 | 35 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.559 | 13 | 35 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0022 | 13 | 35 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.39E-5 | 13 | 35 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 15 | 35 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.39E-5 | 75 | 99 | No hit | No description |
SMART | SM00355 | 230 | 80 | 100 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.19E-8 | 221 | 244 | No hit | No description |
SMART | SM00355 | 0.13 | 222 | 244 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 222 | 249 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-9 | 222 | 246 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 224 | 244 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.19E-8 | 301 | 328 | No hit | No description |
Pfam | PF13912 | 4.1E-13 | 305 | 329 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.46 | 306 | 328 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 306 | 328 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 308 | 328 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MACIEDQQPN FKHYCRVCKK GFMCGRALGG HMRAHGIGDE NGNLEDDDPA SDWEDKLGER 60 TSNKRMYQLR TNPNRLKSCR TCENCGKEFV SWKSFLEHGK CSSDDASESL VSSPDQSDGE 120 DDGGGRRGGG WSKRKRSLRS KVGCLSSHYP PSEEDDLLLA RCLVQLANTR VDPPVAVEPE 180 ESCASASREE ERRHPTTFLG QTTNRAAFDQ KAKGVSSPRG LFECKACKKV FNSHQALGGH 240 RASHKKVKGC YAAKQDQVDE NSNLAAEDDV ITNNEEFLPS KSASSLQFEQ GPAALVGAAR 300 RKSKVHECSI CHRVFTSGQA LGGHKRCHWI TSNAPDTSSS LPKFHLQDTN NMEPATNNHQ 360 QQQQQQQHKP NTDASDKLDL NVPAWAHMSG VRRDPRNPLS FEVSTDMHLQ PWIGRDNRDN 420 NSGPHCHSQQ FQLKNENENN NINKSSGKKN NSNNVVSTKK ASDSNNYVED EADSKLKLAK 480 LSDLNDLKEM DTSGTASSQW LQVGIGSTTE TAGDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 129 | GGRRGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090189.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090189.1 | 0.0 | uncharacterized protein LOC105170939 | ||||
TrEMBL | A0A2G9HTX7 | 0.0 | A0A2G9HTX7_9LAMI; Uncharacterized protein | ||||
STRING | EOX96331 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1910 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 2e-23 | C2H2-like zinc finger protein |