PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090155.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 471aa    MW: 53173.2 Da    PI: 6.0704
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS471.64.3e-144464681374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA++v+sg+le+a+ +L ++s+lasp+gd+mqR+a+yf eALa r++r ++++yka+++++ +   ++ee+ a k+f+e +P++k+++
  XP_011090155.1  46 LIHLLVNCANHVASGSLENANIALDQISHLASPQGDTMQRIASYFSEALADRVLRAWPGVYKAFHSTRIP--VVAEEILAKKMFFEFCPFMKVAF 138
                     689*************************************************************999998..6********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     ++ NqaI+e++ege++vH+iD+++++++QW aL++ L++Rpegpp+lRiTgv++    +ke le++++ L++ Ae+l++pf+fn+ v+++le+l+
  XP_011090155.1 139 VISNQAIVESMEGEKMVHVIDLNATEPAQWCALIRDLSARPEGPPHLRITGVHQ----RKEVLEQMAHILTEEAENLDLPFQFNP-VVSKLENLD 228
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll.........................................................desvsleserdevL 228
                     +e+Lrvk+gEala+++++qlh+ll                                                          +s +++ ++d++L
  XP_011090155.1 229 IEKLRVKTGEALAISSIMQLHTLLaseddlrkkspstpmnngigvnlqrvahmnqstlrellekdtvngyspstdsassspMSSIHSP-NIDSFL 322
                     ****************************************************************************775443333333.59**** PP

            GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                     +++++lsPkv+vv+eq++dhn+++++er++e+l++y+alfd+le+ lpr s er k+E+++lg+ei+n++aceg errerhe+lekW +rle aG
  XP_011090155.1 323 NALWGLSPKVMVVTEQDSDHNAKNLMERLSESLYFYAALFDCLESALPRGSLERLKMEKMILGEEIKNIIACEGVERRERHEKLEKWIQRLELAG 417
                     *********************************************************************************************** PP

            GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     F +vpls++a+ qak+ll+ ++ dgyr++ee+g++v++W+drpL++vSaW+
  XP_011090155.1 418 FANVPLSYYAMLQAKRLLQSYNCDGYRIKEENGCVVICWQDRPLYAVSAWK 468
                     **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.49420448IPR005202Transcription factor GRAS
PfamPF035141.5E-14146468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MFQEDGSSSV TSSPLPMFPM MTLSPGTMSP YPWLKELKPE ERGLYLIHLL VNCANHVASG  60
SLENANIALD QISHLASPQG DTMQRIASYF SEALADRVLR AWPGVYKAFH STRIPVVAEE  120
ILAKKMFFEF CPFMKVAFVI SNQAIVESME GEKMVHVIDL NATEPAQWCA LIRDLSARPE  180
GPPHLRITGV HQRKEVLEQM AHILTEEAEN LDLPFQFNPV VSKLENLDIE KLRVKTGEAL  240
AISSIMQLHT LLASEDDLRK KSPSTPMNNG IGVNLQRVAH MNQSTLRELL EKDTVNGYSP  300
STDSASSSPM SSIHSPNIDS FLNALWGLSP KVMVVTEQDS DHNAKNLMER LSESLYFYAA  360
LFDCLESALP RGSLERLKME KMILGEEIKN IIACEGVERR ERHEKLEKWI QRLELAGFAN  420
VPLSYYAMLQ AKRLLQSYNC DGYRIKEENG CVVICWQDRP LYAVSAWKFR R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-41294701380Protein SCARECROW
5b3h_D6e-41294701380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090155.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090154.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2G9HIR50.0A0A2G9HIR5_9LAMI; Uncharacterized protein
STRINGMigut.N02362.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]