PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090119.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 239aa    MW: 26345 Da    PI: 6.7054
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.2e-18151185135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_011090119.1 151 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 185
                     *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.5E-694237IPR016679Transcription factor, GATA, plant
SMARTSM004018.0E-16145195IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.728145181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.0E-14146182IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-15148208No hitNo description
CDDcd002025.04E-13150197No hitNo description
PfamPF003206.1E-16151185IPR000679Zinc finger, GATA-type
PROSITE patternPS003440151176IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDVYGGLSVD DLLDLPSDDF FSSSSSSPTA VSDFLLHHPS SSSTTCFEQS SVPGYSTDFS  60
DILCVPTDDA AELEWLSNYM DDSFTDFPAS ELNSAISFHP KNSTGFHGRA RSKRSRPSTS  120
ATTESPAPNG GKVENFGNGS GRENTEVARR CTHCASEKTP QWRTGPLGPK TLCNACGVRY  180
KSGRLVPEYR PAASPTFVLT QHSNSHRKVL ELRRQKELLL QQQQLQQQQE GYGRHFRVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090119.11e-179GATA transcription factor 2-like
SwissprotO497418e-66GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A022QX931e-104A0A022QX93_ERYGU; GATA transcription factor
STRINGMigut.B01577.1.p1e-105(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-60GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]