PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 239aa MW: 26345 Da PI: 6.7054 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.3 | 4.2e-18 | 151 | 185 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l XP_011090119.1 151 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 185 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.5E-69 | 4 | 237 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 8.0E-16 | 145 | 195 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.728 | 145 | 181 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.0E-14 | 146 | 182 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 9.5E-15 | 148 | 208 | No hit | No description |
CDD | cd00202 | 5.04E-13 | 150 | 197 | No hit | No description |
Pfam | PF00320 | 6.1E-16 | 151 | 185 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 151 | 176 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDVYGGLSVD DLLDLPSDDF FSSSSSSPTA VSDFLLHHPS SSSTTCFEQS SVPGYSTDFS 60 DILCVPTDDA AELEWLSNYM DDSFTDFPAS ELNSAISFHP KNSTGFHGRA RSKRSRPSTS 120 ATTESPAPNG GKVENFGNGS GRENTEVARR CTHCASEKTP QWRTGPLGPK TLCNACGVRY 180 KSGRLVPEYR PAASPTFVLT QHSNSHRKVL ELRRQKELLL QQQQLQQQQE GYGRHFRVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090119.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090119.1 | 1e-179 | GATA transcription factor 2-like | ||||
Swissprot | O49741 | 8e-66 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A022QX93 | 1e-104 | A0A022QX93_ERYGU; GATA transcription factor | ||||
STRING | Migut.B01577.1.p | 1e-105 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5776 | 19 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 1e-60 | GATA transcription factor 4 |
Publications ? help Back to Top | |||
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