PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 137aa MW: 15316.4 Da PI: 4.8178 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 69.1 | 9.3e-22 | 10 | 58 | 1 | 49 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 +CaaC++lrr+C+kdC ++pyfp ++p+kfa+vh++FGasn++k+l+ XP_011090070.1 10 PCAACRFLRRRCTKDCLFSPYFPPAEPEKFAAVHRIFGASNISKMLQVF 58 7*********************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.35 | 9 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-22 | 10 | 81 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MESCSRTIMP CAACRFLRRR CTKDCLFSPY FPPAEPEKFA AVHRIFGASN ISKMLQVFGL 60 QSELDEVLAE NATLRAQLSV ALSLVASCQS FPFVENSNQE SNHQLQPSEC GNSQNSDMML 120 QYDQVTDSYT ALANMFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-20 | 10 | 80 | 11 | 83 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-20 | 10 | 80 | 11 | 83 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016503570.1 | 6e-31 | PREDICTED: LOB domain-containing protein 25-like isoform X2 | ||||
TrEMBL | A0A1S4CR38 | 1e-29 | A0A1S4CR38_TOBAC; LOB domain-containing protein 25-like isoform X2 | ||||
STRING | Solyc06g082770.2.1 | 4e-26 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 2e-25 | LOB domain-containing protein 24 |