PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011090065.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | SBP | ||||||||
Protein Properties | Length: 382aa MW: 42288.1 Da PI: 8.4265 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.4 | 6.6e-41 | 163 | 240 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegCe+ l +ak+yhrrhkvCe+h+kap+v+v g+eqrfCqqCsrfh++ efDe+krsCrrrLa+hnerrrk+++ XP_011090065.1 163 RCQVEGCEVVLLNAKDYHRRHKVCEMHAKAPKVVVLGIEQRFCQQCSRFHAVAEFDESKRSCRRRLAGHNERRRKSSQ 240 6**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.6E-34 | 161 | 225 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.565 | 161 | 238 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.62E-38 | 162 | 241 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.0E-32 | 164 | 237 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEYYYWNNNS TSTSNSNSAR GHNGNCCSIH AWESSWELAT SSSISATTSR ADWTSYTTLH 60 NSFNYPPSSS AASATDRQVG PSAFHALMLQ QQEKRNDPHY YKPDPLLTCL KLGKRHYFED 120 VPTPPPAAGP ASSVTKKGKP YYSTRGGPCS APLVGATPVV VPRCQVEGCE VVLLNAKDYH 180 RRHKVCEMHA KAPKVVVLGI EQRFCQQCSR FHAVAEFDES KRSCRRRLAG HNERRRKSSQ 240 EPQSLAKKHS QGRHAHFLNS SQCALSLLSS TNYNPWNITQ PSADLPARCS AALRELIAEN 300 RASILAGRQL MDGNYQVEDY CNNNTSVGVK SNSQESQGHV TLDLMQARNS ALGLLSVHDH 360 KASTEGDEEG CSDELWKLPL GY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-31 | 164 | 237 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011090065.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090065.1 | 0.0 | squamosa promoter-binding-like protein 7 isoform X2 | ||||
TrEMBL | A0A2G9HWM9 | 1e-144 | A0A2G9HWM9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B01573.1.p | 6e-90 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 3e-37 | squamosa promoter binding protein-like 10 |