PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011090056.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family SBP
Protein Properties Length: 389aa    MW: 43035 Da    PI: 8.4261
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011090056.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.36.9e-41163240178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegCe+ l +ak+yhrrhkvCe+h+kap+v+v g+eqrfCqqCsrfh++ efDe+krsCrrrLa+hnerrrk+++
  XP_011090056.1 163 RCQVEGCEVVLLNAKDYHRRHKVCEMHAKAPKVVVLGIEQRFCQQCSRFHAVAEFDESKRSCRRRLAGHNERRRKSSQ 240
                     6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-34161225IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.565161238IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-38162241IPR004333Transcription factor, SBP-box
PfamPF031102.0E-32164237IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEYYYWNNNS TSTSNSNSAR GHNGNCCSIH AWESSWELAT SSSISATTSR ADWTSYTTLH  60
NSFNYPPSSS AASATDRQVG PSAFHALMLQ QQEKRNDPHY YKPDPLLTCL KLGKRHYFED  120
VPTPPPAAGP ASSVTKKGKP YYSTRGGPCS APLVGATPVV VPRCQVEGCE VVLLNAKDYH  180
RRHKVCEMHA KAPKVVVLGI EQRFCQQCSR FHAVAEFDES KRSCRRRLAG HNERRRKSSQ  240
EPQSLAKKHS QDIKMMGAGR HAHFLNSSQC ALSLLSSTNY NPWNITQPSA DLPARCSAAL  300
RELIAENRAS ILAGRQLMDG NYQVEDYCNN NTSVGVKSNS QESQGHVTLD LMQARNSALG  360
LLSVHDHKAS TEGDEEGCSD ELWKLPLGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-311642371184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011090056.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090056.10.0squamosa promoter-binding-like protein 7 isoform X1
SwissprotQ7XT424e-59SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A2G9HWM91e-149A0A2G9HWM9_9LAMI; Uncharacterized protein
STRINGMigut.B01573.1.p6e-93(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134081417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.42e-37squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]