PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089920.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 335aa    MW: 36942.8 Da    PI: 8.7605
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.21.3e-19240273134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_011089920.1 240 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGR 273
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-16234284IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358238270IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-14239271IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.43E-14239297No hitNo description
CDDcd002029.07E-17239288No hitNo description
PfamPF003202.0E-17240273IPR000679Zinc finger, GATA-type
PROSITE patternPS003440240265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGEVEPYSCW DGVVDGAAGD EEFDNILSIL DFPMDSLEGD GFVGDWDATK SQYLGPIPSD  60
VLMGPPATAR SKIDTAPVLL PVAAAHIDAT PEPKQLPYQL EDTSGPSIRR QNTYTEVQEQ  120
GVFRTQSPIS VLENSGSLAG KSPLIKRHTG KRTRSKRARP SGVSPWLLMS PPLAPPSASR  180
KTHNARKTKE RRRKSSSFRS SLAVETTEDL SYAAKYQFPA SDHVEPQNAA LQRPAIVKKC  240
THCEVTKTPQ WREGPLGPKT LCNACGVRYR SGRLFPEYRP AASPTFIPSL HSNSHKKVIE  300
MRSKAKQQVS NIEEHPVSPQ MEFIPMSSYL FDPVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RTRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089920.10.0GATA transcription factor 11 isoform X2
TrEMBLA0A2G9HBY51e-135A0A2G9HBY5_9LAMI; Uncharacterized protein
STRINGMigut.N02591.1.p1e-94(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.27e-46GATA transcription factor 11