PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089919.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 353aa    MW: 38948 Da    PI: 8.3607
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.4e-19258291134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  XP_011089919.1 258 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGR 291
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-16252302IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358256288IPR000679Zinc finger, GATA-type
CDDcd002021.16E-16257306No hitNo description
Gene3DG3DSA:3.30.50.103.0E-14257289IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.57E-14257315No hitNo description
PfamPF003202.2E-17258291IPR000679Zinc finger, GATA-type
PROSITE patternPS003440258283IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEGNGFSRID ILGHFSENMG EVEPYSCWDG VVDGAAGDEE FDNILSILDF PMDSLEGDGF  60
VGDWDATKSQ YLGPIPSDVL MGPPATARSK IDTAPVLLPV AAAHIDATPE PKQLPYQLED  120
TSGPSIRRQN TYTEVQEQGV FRTQSPISVL ENSGSLAGKS PLIKRHTGKR TRSKRARPSG  180
VSPWLLMSPP LAPPSASRKT HNARKTKERR RKSSSFRSSL AVETTEDLSY AAKYQFPASD  240
HVEPQNAALQ RPAIVKKCTH CEVTKTPQWR EGPLGPKTLC NACGVRYRSG RLFPEYRPAA  300
SPTFIPSLHS NSHKKVIEMR SKAKQQVSNI EEHPVSPQME FIPMSSYLFD PVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174RTRSKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089919.10.0GATA transcription factor 11 isoform X1
TrEMBLA0A2G9HBY51e-135A0A2G9HBY5_9LAMI; Uncharacterized protein
STRINGMigut.N02591.1.p2e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-45GATA transcription factor 11