PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089827.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 1024aa    MW: 113674 Da    PI: 4.9763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089827.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-173884148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l  av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
   XP_011089827.1 38 KGQWTAEEDEILRIAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84
                     799****************************9.************986 PP

2Myb_DNA-binding65.11.3e-2090136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v ++G++ W+tIa++++ gR +kqc++rw+++l
   XP_011089827.1  90 KGPWSKEEDEIIIELVSKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 136
                      79******************************.*************97 PP

3Myb_DNA-binding48.22.5e-15142184145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
   XP_011089827.1 142 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 184
                      579*******************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4473384IPR017930Myb domain
SMARTSM007172.3E-133786IPR001005SANT/Myb domain
PfamPF002491.8E-143884IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-213992IPR009057Homeodomain-like
SuperFamilySSF466891.65E-153994IPR009057Homeodomain-like
CDDcd001671.28E-124184No hitNo description
PROSITE profilePS5129434.16685140IPR017930Myb domain
SuperFamilySSF466891.05E-3187183IPR009057Homeodomain-like
SMARTSM007171.2E-1989138IPR001005SANT/Myb domain
PfamPF002494.7E-1990136IPR001005SANT/Myb domain
CDDcd001673.56E-1792136No hitNo description
Gene3DG3DSA:1.10.10.605.9E-2893138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-21139191IPR009057Homeodomain-like
SMARTSM007176.3E-15141189IPR001005SANT/Myb domain
PROSITE profilePS5129419.513141191IPR017930Myb domain
PfamPF002492.1E-13142185IPR001005SANT/Myb domain
CDDcd001671.18E-11144184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032875Biological Processregulation of DNA endoreduplication
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MESDRTSNNT LSDGGRNFLH RARPLHGRTT GPTRRSTKGQ WTAEEDEILR IAVQRFKGKN  60
WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IIELVSKYGP KKWSTIAQHL  120
PGRIGKQCRE RWHNHLNPNI NKEAWTQEEE LALIRAHQIY GNKWAELTKF LPGRTDNAIK  180
NHWNSSVKKK LDMYLASGLL SQFQGPPLVS RPNHSAASSS SRAQQSGEDD SVFKGGVEVE  240
EASECSQGST IANFSQPLNN AIAHPRRDCR GTEESGSIPY PEDYCPTFQE ATYGIPEVPC  300
ELDDKYLEHD FPLDWGTFAG KDWQLNANEL PDMSLLDLGQ ESSGLVLPSV SDRNNHEAVP  360
FPQESSIPLG ASTSVEKVVG DTNTSNPIAN LDYRMVYPEA DLGVCCPSEN VISDIDGLTD  420
SLLHRSSNFQ IPEDETFASQ SCYMPPGNSV IQPLPLLPTQ LPPADASLMF SMNPHQYSYP  480
SHENAGQECI PPSTHGRFIY SKESDYSNEA REAPKLVPAN DFVLAPCDDS HCSSEDKDIK  540
FDEQKESGAL FYEPPRFPSL DIPFFSCDLI QSGSDLHQEY SPLGIRQLMI SSMTPFKLWD  600
SPSRDDSPVA VLKSAAKTFT STPSILKKRQ RDLVSPLSEK RFEKKLEGFS KQESFSNLTN  660
DFSRLEVMFD ECMEKKGPLL SLSPNKRNSE PSCKEKENAP PPCGQAENEG NENIIVPEIK  720
ISIEEFNSSD SLNKITEQTA VADVKAKGGG NNVTEKAREF SGILVEHDMN DLIFFSPDRF  780
GSKNDRAIGP SPRALGNQYS RRLDALSKNG AILSSSETSC FSVICSPRLC TKKDGTNLVI  840
STSLQSLSPS DKKAESSGTG VASENNSIFV ETPFKRSIES PLAWKSPWFI NTFVPGPRID  900
TDITIEDIGY FLSPGDRSYD AIGLMKQLGE QTAGAFADAQ EVLGDETPET IMKGQCSVNH  960
EGRKENNNSP NSQAEYHSAL AANFMTERRT LDFSECATPA KETGKPSNSI SFSSPSSYLL  1020
KECR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C7e-69381916159MYB PROTO-ONCOGENE PROTEIN
1h89_C7e-69381916159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00505DAPTransfer from AT5G11510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089827.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7801020.0KR780102.1 Rehmannia glutinosa 3R MYB protein (MYB26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089667.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089827.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089990.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_020553179.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_020553183.10.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A2G9GJ310.0A0A2G9GJ31_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.E01513.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.10.0myb domain protein 3r-4