PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089823.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 258aa MW: 29565.4 Da PI: 7.6081 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv +v+++G ++W+ Ia+ g++Rt+k+c++rw +yl XP_011089823.1 9 KGPWTEQEDVQLVLYVNLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 8.9e-18 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ XP_011089823.1 62 RGKMTPHEERLVLELHSKYGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.175 | 4 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-30 | 6 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-15 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-10 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 25.713 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-17 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 62 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-12 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 64 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MMEKEGVRKG PWTEQEDVQL VLYVNLFGDR RWDFIAKVSG LKRTGKSCRL RWVNYLHPGL 60 KRGKMTPHEE RLVLELHSKY GNRWSRIARK LPGRTDNEIK NYWRTHMRKM AQERKKGAAS 120 PSVSASSLSS NSSSSSISNS PTAELISTPA LQAKEHSFYD TGGMELMAAA PGEKKITSSK 180 AEESPKVYSM EDIWEDFEFS QENCNQLMTC QAVASPIWDY CPTDHSLQLW SMDEEESRLP 240 MQPIGDDHFH SFPYYMTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-27 | 9 | 109 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 7e-27 | 9 | 109 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-27 | 9 | 109 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 4e-27 | 9 | 109 | 27 | 126 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-27 | 9 | 109 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 9 | 109 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089823.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR780091 | 6e-78 | KR780091.1 Rehmannia glutinosa R2R3-MYB protein (MYB15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089823.1 | 0.0 | transcription factor MYB48 isoform X1 | ||||
Swissprot | Q9LX82 | 2e-78 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A059PRS8 | 1e-103 | A0A059PRS8_SALMI; MYB-related transcription factor | ||||
STRING | VIT_06s0004g04140.t01 | 4e-93 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 6e-78 | myb domain protein 48 |
Publications ? help Back to Top | |||
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