PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089816.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 314aa    MW: 35095.6 Da    PI: 6.7976
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089816.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.53.1e-131257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  + Rt+k+c++rw +
   XP_011089816.1 12 KGPWKAEEDEVLINHVKRFGPRDWSSIRSKGLLQRTGKSCRLRWVN 57
                     79*************************8887799**********87 PP
2Myb_DNA-binding40.46.8e-1368107344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++++E+   +++ +q+G++ W++Ia ++  gRt++++k++w
   XP_011089816.1  68 KFSADEERTVIELQAQFGNK-WAKIATYLS-GRTDNDVKNFW 107
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.008763IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-20960IPR009057Homeodomain-like
SuperFamilySSF466893.87E-2710107IPR009057Homeodomain-like
SMARTSM007172.4E-101161IPR001005SANT/Myb domain
CDDcd001676.28E-111459No hitNo description
PfamPF139216.6E-121574No hitNo description
Gene3DG3DSA:1.10.10.604.9E-1761113IPR009057Homeodomain-like
PROSITE profilePS5129416.66364115IPR017930Myb domain
SMARTSM007172.1E-1165113IPR001005SANT/Myb domain
CDDcd001677.97E-1068107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAHHNGTLEV KKGPWKAEED EVLINHVKRF GPRDWSSIRS KGLLQRTGKS CRLRWVNKLR  60
PNLKNGVKFS ADEERTVIEL QAQFGNKWAK IATYLSGRTD NDVKNFWSSR QKRLARILQT  120
STPSSSNSPK NPKEAKAPTF HIPSLEAPKF SSSTEEESGT NSRSCSSPHV SDSMMIKMVP  180
LSDLGQYPGL LTYEHSLFQF NYTPSDKNTF VEPQSHLSFP SIPQLQPPDF PLPLESQDVI  240
TRLDHTFLDV FELAGASALG TAQLPMVPSF LGPEIAKNGE TPCAVTTPDS FIDDFPPIDM  300
FDHIEALPSP SEWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-26911324126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:21285328, ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089816.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269|PubMed:21441434, ECO:0000269|PubMed:25057814}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089816.20.0myb-related protein MYBAS2-like
SwissprotA0A178VEK71e-79DUO1_ARATH; Transcription factor DUO1
TrEMBLA0A2G9GD371e-134A0A2G9GD37_9LAMI; Transcription factor, Myb superfamily
STRINGVIT_15s0021g02040.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-72MYB family protein
Publications ? help Back to Top
  1. Zheng B,He H,Zheng Y,Wu W,McCormick S
    An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana.
    PLoS Genet., 2014. 10(7): p. e1004421
    [PMID:25057814]
  2. Peters B, et al.
    A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter.
    Plant Physiol., 2017. 173(1): p. 280-293
    [PMID:27624837]
  3. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]