PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089667.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 1024aa MW: 113674 Da PI: 4.9763 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 38 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_011089667.1 38 KGQWTAEEDEILRIAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 84 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 65.1 | 1.3e-20 | 90 | 136 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v ++G++ W+tIa++++ gR +kqc++rw+++l XP_011089667.1 90 KGPWSKEEDEIIIELVSKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 136 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.2 | 2.5e-15 | 142 | 184 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_011089667.1 142 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 184 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.447 | 33 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-13 | 37 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 38 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 39 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-15 | 39 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.28E-12 | 41 | 84 | No hit | No description |
PROSITE profile | PS51294 | 34.166 | 85 | 140 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-31 | 87 | 183 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-19 | 89 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-19 | 90 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.56E-17 | 92 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-28 | 93 | 138 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 139 | 191 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-15 | 141 | 189 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.513 | 141 | 191 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-13 | 142 | 185 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-11 | 144 | 184 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1024 aa Download sequence Send to blast |
MESDRTSNNT LSDGGRNFLH RARPLHGRTT GPTRRSTKGQ WTAEEDEILR IAVQRFKGKN 60 WKKIAECFKD RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IIELVSKYGP KKWSTIAQHL 120 PGRIGKQCRE RWHNHLNPNI NKEAWTQEEE LALIRAHQIY GNKWAELTKF LPGRTDNAIK 180 NHWNSSVKKK LDMYLASGLL SQFQGPPLVS RPNHSAASSS SRAQQSGEDD SVFKGGVEVE 240 EASECSQGST IANFSQPLNN AIAHPRRDCR GTEESGSIPY PEDYCPTFQE ATYGIPEVPC 300 ELDDKYLEHD FPLDWGTFAG KDWQLNANEL PDMSLLDLGQ ESSGLVLPSV SDRNNHEAVP 360 FPQESSIPLG ASTSVEKVVG DTNTSNPIAN LDYRMVYPEA DLGVCCPSEN VISDIDGLTD 420 SLLHRSSNFQ IPEDETFASQ SCYMPPGNSV IQPLPLLPTQ LPPADASLMF SMNPHQYSYP 480 SHENAGQECI PPSTHGRFIY SKESDYSNEA REAPKLVPAN DFVLAPCDDS HCSSEDKDIK 540 FDEQKESGAL FYEPPRFPSL DIPFFSCDLI QSGSDLHQEY SPLGIRQLMI SSMTPFKLWD 600 SPSRDDSPVA VLKSAAKTFT STPSILKKRQ RDLVSPLSEK RFEKKLEGFS KQESFSNLTN 660 DFSRLEVMFD ECMEKKGPLL SLSPNKRNSE PSCKEKENAP PPCGQAENEG NENIIVPEIK 720 ISIEEFNSSD SLNKITEQTA VADVKAKGGG NNVTEKAREF SGILVEHDMN DLIFFSPDRF 780 GSKNDRAIGP SPRALGNQYS RRLDALSKNG AILSSSETSC FSVICSPRLC TKKDGTNLVI 840 STSLQSLSPS DKKAESSGTG VASENNSIFV ETPFKRSIES PLAWKSPWFI NTFVPGPRID 900 TDITIEDIGY FLSPGDRSYD AIGLMKQLGE QTAGAFADAQ EVLGDETPET IMKGQCSVNH 960 EGRKENNNSP NSQAEYHSAL AANFMTERRT LDFSECATPA KETGKPSNSI SFSSPSSYLL 1020 KECR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-69 | 38 | 191 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-69 | 38 | 191 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089667.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR780102 | 0.0 | KR780102.1 Rehmannia glutinosa 3R MYB protein (MYB26) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089667.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_011089827.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_011089990.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_020553179.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
Refseq | XP_020553183.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
TrEMBL | A0A2G9GJ31 | 0.0 | A0A2G9GJ31_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | Migut.E01513.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3107 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 0.0 | myb domain protein 3r-4 |