PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011089611.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 224aa MW: 25585.8 Da PI: 5.3263

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011089611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.7	7.2e-27	56	145	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA++vGF vr+ + ++s+ +g++ r++ C+k+g++ + k k e+++r++ r gCka++ k+ek+gkw+vt+++++HnH+l XP_011089611.1 56 RFYTDYARRVGFVVRIMQRRRSEIDGRTLARRLGCNKQGFSPNAKGKIGPEKKPRPSAREGCKATILFKLEKSGKWVVTRFVKDHNHPLI 145 5***************************************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-25	56	145	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MVEGSVSESE RCDWDSRDSE ENDDVECEDN RRSLEGGEVL EPYVGMEFES EDDARRFYTD 60 YARRVGFVVR IMQRRRSEID GRTLARRLGC NKQGFSPNAK GKIGPEKKPR PSAREGCKAT 120 ILFKLEKSGK WVVTRFVKDH NHPLIATAQE YTDVRDKDKK IQELARELQR QEELCAAYRE 180 RLINLLANVE KQTDSLSMKV LAVVENVKEA EAAALNEALT LSAI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011089611.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089611.1	1e-164	protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A2G9G2Z9	1e-139	A0A2G9G2Z9_9LAMI; Uncharacterized protein
STRING	Migut.N00673.1.p	1e-125	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11602	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	4e-57	FAR1 family protein