PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089606.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 225aa MW: 25896.4 Da PI: 9.0289 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 93.2 | 3.2e-29 | 57 | 144 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + k+ +++r++ra tr gCka+++vkkek+ kw+vtk+ +eHnH+l+ XP_011089606.1 57 FYDAYATKMGFIMRVDAFRRSMRDGNVVWRRLVCNKEGFRKCRPKR-SESRKPRAITREGCKAMIVVKKEKTCKWVVTKFFKEHNHPLV 144 9*******************************************99.9***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-27 | 57 | 144 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MIVASLSSVD ESQCAGNEAE TIENSHGTEL VVNNEGHSER EPFVGMEFDS EEAAKVFYDA 60 YATKMGFIMR VDAFRRSMRD GNVVWRRLVC NKEGFRKCRP KRSESRKPRA ITREGCKAMI 120 VVKKEKTCKW VVTKFFKEHN HPLVAAPVNT RRSAQLSQTP DEKDVKIREL TAELQRERRR 180 SAALQEQLNS ILEDMEEHSK HLSRNITNIV QSVNEIESRR IVFPS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089606.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089606.1 | 1e-167 | protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | A0A2G9G3B5 | 1e-136 | A0A2G9G3B5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N00674.1.p | 1e-123 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12791 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-92 | FAR1 family protein |