PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011089604.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 218aa MW: 24971.6 Da PI: 9.8375

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011089604.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.5	1.9e-27	50	137	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YAk vGF +r+ + ++s+++g++++r+f C+keg+r ++k k+ + rr+ra+tr gCka+++v+k+k+g+w v+k+e+ H+H+l XP_011089604.1 50 YYDAYAKYVGFIIRIGNCHRSSHDGSVISRRFLCNKEGFRVNKKVKKLEVRRPRAVTREGCKAMIMVRKDKSGTWIVAKVETRHSHPL 137 8*****************************************9999************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-25	50	137	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEVGSHMHVC GGGETTSLYD EKNFTMQELH ANTEPYVGME FESEEAAMAY YDAYAKYVGF 60 IIRIGNCHRS SHDGSVISRR FLCNKEGFRV NKKVKKLEVR RPRAVTREGC KAMIMVRKDK 120 SGTWIVAKVE TRHSHPLGMP PGKVRRRSVQ AWSQDEKDKR IHELSAELHR TKQQLAKCQK 180 QLGAVLNDVE LHVNHLTRSI QHIVQNVKEV GNQYPSQL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011089604.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089602.1	1e-165	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2R6QJP0	1e-101	A0A2R6QJP0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment)
STRING	Aquca_058_00091.1	2e-85	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-51	FAR1 family protein