PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011089574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 255aa MW: 27396.6 Da PI: 9.1288 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.7e-07 | 62 | 106 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 WT+eE+ +l d+ ++G++ + ++Ia+ + +t ++ +r XP_011089574.1 62 DWTPEEQSILEDLLVKYGSEsvivRYAKIAQALR-DKTVRDVALRC 106 6*********************************.99999998885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.58E-7 | 56 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0019 | 59 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-6 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 63 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.78E-6 | 63 | 107 | No hit | No description |
Pfam | PF12579 | 6.2E-17 | 196 | 229 | IPR022228 | Protein of unknown function DUF3755 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MAASANPSSG AHSNASNGNN NSGNSKGGGQ ENANGGGLSA TENSVVGPTQ AALRHNPGLS 60 VDWTPEEQSI LEDLLVKYGS ESVIVRYAKI AQALRDKTVR DVALRCRWMS KKENGKRRKD 120 DSSSSRKSKD KKEKVTDSLP KSSQVANRSN GPAYVQSMMS MESDDGISYK DIGGAAGQLL 180 EQSAHALDQI SANFSACKIH DNINLFCQAR TNILSILNDL NDTPEIMKQM PPLPVKLNEE 240 LANSILPRTS LPKKS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 125 | 132 | RKSKDKKE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011089574.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089574.1 | 0.0 | uncharacterized protein LOC105170494 isoform X2 | ||||
TrEMBL | A0A2G9HQI7 | 1e-140 | A0A2G9HQI7_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N00689.1.p | 1e-138 | (Erythranthe guttata) |