PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089502.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 750aa    MW: 84322.9 Da    PI: 4.6888
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089502.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS361.21.5e-1103767471373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+ v+++d + a + L+++s+++sp+g+  qRla +f  +L+arl ++++ely++l+ ++ +    +e+l+a++++  ++P+ k+s 
  XP_011089502.1 376 LRTLLISCAQSVAADDRKTAYEQLKQISQHSSPTGEVYQRLANVFSSGLQARLGGTGTELYASLTRRKIT---AAEKLKAYQVYLSACPFKKMSI 467
                     6789*********************************************************999999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + a ++I   +++++++Hi+Df+i +G+QWpaL+q L++R++gpp+lRiTg++ p++g   ++++eetg rLak++e++gvpfe+++++++++e+
  XP_011089502.1 468 FFAIKMIALVASEATTLHIVDFGILYGFQWPALIQFLSERTGGPPKLRITGIELPQPGfrPADRVEETGCRLAKYCERFGVPFEYQAIATQNWEK 562
                     *********************************************************9******************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++pgE+l+Vn+ ++  rllde+v +es+rd+vL+l+k+++P+++v +  + +++++ F++rf eal +ysalfd+++a+lpr++ +ri
  XP_011089502.1 563 IKIEDLKIEPGEVLVVNCLFRFGRLLDETVMVESPRDAVLNLIKKMKPDIFVNAVTNGSYSAPFFVTRFREALFHYSALFDMFDATLPRDNPHRI 657
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + E+ + g+e+ nv+acegaer+er et+++W+ r ++aGFkp pl+++++++ ++ + + + + +  +e+ +++++gWk+r + + S+W
  XP_011089502.1 658 NFEQDFYGPEVINVIACEGAERVERPETYKQWQVRCRRAGFKPFPLNHEIMNKLRRKVITGYHKDFLFDEDGNWMLQGWKGRIICASSCW 747
                     ******************************************************99888877677************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.066350728IPR005202Transcription factor GRAS
PfamPF035145.1E-108376747IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDPPFNEMLN TVNGKKFGDE TFLPSYEQSQ NLTNGIKHDN WELDDLDIPF LPLSPSPDNF  60
APSLTMSYET ESPDDQDSDP VLKFLNQILV EEDMEEKPSM FYDPLALRAA EKSLYEVIGK  120
EYPPSPFQPS SHGDQTSDSP DSFFGTSSEY TNSSTAGSSA IDPQWIVDPG ENNTSVEHGC  180
QQDSSSNLVL PVSSQTSFGT VNGSYDNATT QINSSENTSL LQNIFSDSES ILQFKRGMEE  240
ASKFLPTGNQ LIIDLDKYVL PQKSEDITPA VAIKVEKDEI DESPHVLRGR KHQYPDDADP  300
EDVERSSKQS AVYVEDVELS EMFDRVLLCD VKDDSVSRSC DAKLPGGVEK TVLPNGLNGG  360
RTRARKNEGK RDSVDLRTLL ISCAQSVAAD DRKTAYEQLK QISQHSSPTG EVYQRLANVF  420
SSGLQARLGG TGTELYASLT RRKITAAEKL KAYQVYLSAC PFKKMSIFFA IKMIALVASE  480
ATTLHIVDFG ILYGFQWPAL IQFLSERTGG PPKLRITGIE LPQPGFRPAD RVEETGCRLA  540
KYCERFGVPF EYQAIATQNW EKIKIEDLKI EPGEVLVVNC LFRFGRLLDE TVMVESPRDA  600
VLNLIKKMKP DIFVNAVTNG SYSAPFFVTR FREALFHYSA LFDMFDATLP RDNPHRINFE  660
QDFYGPEVIN VIACEGAERV ERPETYKQWQ VRCRRAGFKP FPLNHEIMNK LRRKVITGYH  720
KDFLFDEDGN WMLQGWKGRI ICASSCWVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-433657493380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089502.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089502.10.0scarecrow-like protein 14
RefseqXP_020552354.10.0scarecrow-like protein 14
RefseqXP_020552355.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2G9I6D90.0A0A2G9I6D9_9LAMI; Uncharacterized protein
STRINGMigut.D02079.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]