PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089501.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GRAS
Protein Properties Length: 673aa    MW: 75997.8 Da    PI: 7.707
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089501.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.95e-1152986691374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cAeavs  +++  ++lL+r+++++s++gd+++Rl++yf++AL+ar+a+++s ly a+++++ +    +e l+++++++ ++P+ ++s+
  XP_011089501.1 298 LRSLLTRCAEAVSGFNNKTGEELLKRIRQHSSSYGDANERLTHYFANALEARMAGTGSALYTAFASRQIP---AAELLKSYQTYVTACPFKRMSN 389
                     6899*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN+ I + + +++r+HiiDf+i +G+QWp+++q L+  p+gpp+l+iTg++ p+ g   +e++e+tg+rL +++e+++vpf++n+ +akr++d
  XP_011089501.1 390 IFANKSIGRYAREATRIHIIDFGILYGFQWPCIIQGLSLMPGGPPRLKITGIDFPQRGfkPAERVEQTGRRLMQYCERFNVPFQYNA-IAKRWDD 483
                     ********************************************************9999***************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E+l+Vn+ ++l ++ des+ ++s+rd+vLkl+k+++P ++v+   +  +n++ F++rf eal++y++lfd++ea++pre+ +r 
  XP_011089501.1 484 IRVEDLNIERDEMLVVNCLYRLRHVADESAGVNSPRDAVLKLIKKINPVLFVHGVVNGTYNAPFFATRFREALYHYTSLFDMMEATIPREDPDRL 578
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Ere++gr+++nvvaceg+er+er et+++W+ r ++aGF++++l+ +++k++k+ +++ + + + ++ees+++++gW++r ++++S+W+
  XP_011089501.1 579 LYEREVFGRDVMNVVACEGSERIERPETYKQWQVRNQRAGFRQLQLNREIMKEIKTKVKRDYHNDFLLDEESDWMLQGWRGRVMYALSCWT 669
                     ************************************************************99888*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.277272649IPR005202Transcription factor GRAS
PfamPF035141.7E-112298669IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MGTVSGNCRL SGVPGILTGS SQLRRSGNLN DEEAPVACDY FGGVYEYIKQ MLMEEDDLEH  60
RPCMFQDCSA LQAAEKYFYD ALSDKCSAPV NASLSPQASF AVNNQQVVSS DLSRSASGFA  120
PWSVLDSHIV CGEGVFIGGP SAFSCHYDGL EDSTERRFQV LNSGGVVRPS QQICQPSGLE  180
SDGAPLILTG GGRGGQGNLQ DRDSRSKKAR DRVDQGDCVE ERSSKQLAGY AEESVQMENF  240
DKSLLCQKMN PGFYETPAEE SSSGSDENMK QYRKTTEVKR GRPKGSKKNR KVREVVDLRS  300
LLTRCAEAVS GFNNKTGEEL LKRIRQHSSS YGDANERLTH YFANALEARM AGTGSALYTA  360
FASRQIPAAE LLKSYQTYVT ACPFKRMSNI FANKSIGRYA REATRIHIID FGILYGFQWP  420
CIIQGLSLMP GGPPRLKITG IDFPQRGFKP AERVEQTGRR LMQYCERFNV PFQYNAIAKR  480
WDDIRVEDLN IERDEMLVVN CLYRLRHVAD ESAGVNSPRD AVLKLIKKIN PVLFVHGVVN  540
GTYNAPFFAT RFREALYHYT SLFDMMEATI PREDPDRLLY EREVFGRDVM NVVACEGSER  600
IERPETYKQW QVRNQRAGFR QLQLNREIMK EIKTKVKRDY HNDFLLDEES DWMLQGWRGR  660
VMYALSCWTP SPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-482986685374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089501.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089501.10.0scarecrow-like protein 14
SwissprotQ9XE581e-178SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2G9I6E20.0A0A2G9I6E2_9LAMI; Uncharacterized protein
STRINGMigut.D02077.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-179SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]