PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011089500.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

GRAS

Protein Properties

Length: 735aa MW: 82646 Da PI: 5.7778

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011089500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	381.2	1.3e-116	360	731	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+s d + ++ lL r+++++sp+gd ++Rla+yf++AL arla+++ y a ++ + s +e l+a+k+f ++P+ k+s+ XP_011089500.1 360 LRSLLMQCAQAVASYDSRTVTDLLMRIRQHSSPQGDGTERLAHYFANALDARLAGTGMASYTAYSSMRIS---AAEILKAYKTFITACPFKKMSN 451 689**************************************************777777666666665...99**************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 l+aN++I++ + g +++Hi+Df+i +G+QWp+L+qaL++Rp+gpp+lRiTg++ p++g +e++ tg+rLak++e+++vpfe+n+ +a+++e+ XP_011089500.1 452 LLANKTIVKLATGVTTLHIVDFGILYGFQWPCLIQALSERPGGPPKLRITGIDFPQPGfrPAERVGDTGRRLAKYCERFKVPFEYNA-IAQKWET 545 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+L+++++E l+Vn+ ++lh+++de+v ++s+rd+vL+l+k+++P+++++ + +n++ F++rf eal ++s+lfd++ea+++re+++r+ XP_011089500.1 546 IRLEDLKIEKNELLVVNSLYRLHNVPDETVMVNSPRDAVLNLIKKIKPDMFIHGVVNGTYNTPFFVTRFREALFHFSSLFDMFEATISREDQHRR 640 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 E++++g++++n++aceg+er+er et+++W+ r ++aGF++++l+++++k +++ +++++ + ++v+e+ +++++gWk+r + ++S W+ XP_011089500.1 641 LFEEQVFGKDAMNIIACEGTERVERPETYKQWQVRNQRAGFRQLALDQEIVKYVRSKVKRHYHKDFSVDEDGKWMLQGWKGRVIHAISYWQ 731 **********************************************************888***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.569	334	711	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-114	360	731	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MNTVVQGYLA PTNDFQLNCC PKSVFPEENL HVFGYKLDPG FNGFPRITNG SSPVDESCSE 60 REISKEFSVE LGNGSSPVPD SSSSEGEISE EIDHSDAILK FISQMLMEEE DLGTKPCMLH 120 DSLALQATEK SLFDVLNNPT DGNAESPSDV FTKSCSISSS GSSLDVSNVV ESAWNPHNLG 180 DFESLVSPPQ VQYPSLDAFP SSWLPVDSSK GSSTGPFWAS DSANEMQFVN MSSLSKGEVS 240 NFELFNDELL SNNSELYNKT SDQSSSSSLR GKKNRYREES DSIEEHRISK QLANNVAESE 300 PLEMYDNVLL CAKSHISICG DEDEIEAKEK LQQYEQPKGS NRGRPKGGKK NGIVKEVVDL 360 RSLLMQCAQA VASYDSRTVT DLLMRIRQHS SPQGDGTERL AHYFANALDA RLAGTGMASY 420 TAYSSMRISA AEILKAYKTF ITACPFKKMS NLLANKTIVK LATGVTTLHI VDFGILYGFQ 480 WPCLIQALSE RPGGPPKLRI TGIDFPQPGF RPAERVGDTG RRLAKYCERF KVPFEYNAIA 540 QKWETIRLED LKIEKNELLV VNSLYRLHNV PDETVMVNSP RDAVLNLIKK IKPDMFIHGV 600 VNGTYNTPFF VTRFREALFH FSSLFDMFEA TISREDQHRR LFEEQVFGKD AMNIIACEGT 660 ERVERPETYK QWQVRNQRAG FRQLALDQEI VKYVRSKVKR HYHKDFSVDE DGKWMLQGWK 720 GRVIHAISYW QPAHK

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MNTVVQGYLA PTNDFQLNCC PKSVFPEENL HVFGYKLDPG FNGFPRITNG SSPVDESCSE  60
REISKEFSVE LGNGSSPVPD SSSSEGEISE EIDHSDAILK FISQMLMEEE DLGTKPCMLH  120
DSLALQATEK SLFDVLNNPT DGNAESPSDV FTKSCSISSS GSSLDVSNVV ESAWNPHNLG  180
DFESLVSPPQ VQYPSLDAFP SSWLPVDSSK GSSTGPFWAS DSANEMQFVN MSSLSKGEVS  240
NFELFNDELL SNNSELYNKT SDQSSSSSLR GKKNRYREES DSIEEHRISK QLANNVAESE  300
PLEMYDNVLL CAKSHISICG DEDEIEAKEK LQQYEQPKGS NRGRPKGGKK NGIVKEVVDL  360
RSLLMQCAQA VASYDSRTVT DLLMRIRQHS SPQGDGTERL AHYFANALDA RLAGTGMASY  420
TAYSSMRISA AEILKAYKTF ITACPFKKMS NLLANKTIVK LATGVTTLHI VDFGILYGFQ  480
WPCLIQALSE RPGGPPKLRI TGIDFPQPGF RPAERVGDTG RRLAKYCERF KVPFEYNAIA  540
QKWETIRLED LKIEKNELLV VNSLYRLHNV PDETVMVNSP RDAVLNLIKK IKPDMFIHGV  600
VNGTYNTPFF VTRFREALFH FSSLFDMFEA TISREDQHRR LFEEQVFGKD AMNIIACEGT  660
ERVERPETYK QWQVRNQRAG FRQLALDQEI VKYVRSKVKR HYHKDFSVDE DGKWMLQGWK  720
GRVIHAISYW QPAHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-49	364	731	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011089500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089500.1	0.0	scarecrow-like protein 30
TrEMBL	A0A2G9I6F4	0.0	A0A2G9I6F4_9LAMI; Uncharacterized protein
STRING	PGSC0003DMT400063769	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein