PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | MYB | ||||||||
Protein Properties | Length: 241aa MW: 27555.8 Da PI: 7.7116 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.5e-16 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv +v+++G ++W+ Ia+ g++Rt+k+c++rw +yl XP_011089426.1 9 KGPWTEQEDVQLVFYVNLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 56 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ XP_011089426.1 62 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 107 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.919 | 4 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.13E-29 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 9 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 10 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.04E-9 | 11 | 56 | No hit | No description |
PROSITE profile | PS51294 | 26.464 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-15 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 64 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.07E-11 | 64 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEKEEGTRKG PWTEQEDVQL VFYVNLFGDR RWDFIAKVSG LKRTGKSCRL RWVNYLHPGL 60 KRGKMTPHEE RLVLELHSKW GNRWSRIARK LPGRTDNEIK NYWRTHMRKK AQERKKTSII 120 SPTSPSSSSS SNSNSPAVGF EPMIETEGRS FYDTGGVDIA TGQNNSGVEI EGSAEVYSMD 180 EIWKDIELSE ESSNLRSQGV MSSSTPPIWD FWAADSLWSM DGQDAASKMD SFPFYYNHLT 240 G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-28 | 9 | 111 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-28 | 9 | 111 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 9e-28 | 9 | 111 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089426.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR780091 | 1e-78 | KR780091.1 Rehmannia glutinosa R2R3-MYB protein (MYB15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089426.1 | 1e-180 | transcription factor MYB48 isoform X2 | ||||
Swissprot | Q9LX82 | 1e-82 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A059PRJ4 | 3e-98 | A0A059PRJ4_SALMI; MYB-related transcription factor | ||||
STRING | VIT_06s0004g04140.t01 | 1e-90 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 2e-81 | myb domain protein 48 |
Publications ? help Back to Top | |||
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