PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089388.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WOX
Protein Properties Length: 207aa    MW: 24187.6 Da    PI: 9.5693
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-20666257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++R+++t+eql +Leel+++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  XP_011089388.1  6 STRWCPTPEQLMILEELYRRgLRTPKASQIQKITAHLsfygKIQGKNVFYWFQNHKARDRQ 66
                    58*****************99*************************************996 PP
2Wus_type_Homeobox118.14e-38567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       ++tRW+PtpeQ++iLeely++GlrtP++++iq+ita+L+ yGki++kNVfyWFQN+kaR+rqk
     XP_011089388.1  5 PSTRWCPTPEQLMILEELYRRGLRTPKASQIQKITAHLSFYGKIQGKNVFYWFQNHKARDRQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.977267IPR001356Homeobox domain
SMARTSM003891.7E-4471IPR001356Homeobox domain
CDDcd000861.00E-4567No hitNo description
PfamPF000468.0E-18666IPR001356Homeobox domain
SuperFamilySSF466894.28E-11767IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-7866IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSPSPSTRWC PTPEQLMILE ELYRRGLRTP KASQIQKITA HLSFYGKIQG KNVFYWFQNH  60
KARDRQKLRK KLAKQLHQHH LLQQQQLYHH HQQQQLHPQT QYNTHTILDF QSPNSPFHHY  120
SSICYSAQNL HAQGGGVCEE VPEEVMRQTW KADLPKDFLM RTYGHDPVMI MDVGPTFPCC  180
RPSPRPLETL ELFPLRSPTA NAKEPAS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089388.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089388.11e-155WUSCHEL-related homeobox 3-like
SwissprotQ9SIB44e-46WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLA0A1Q3BTT34e-64A0A1Q3BTT3_CEPFO; Homeobox domain-containing protein
STRINGEOY342244e-53(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.12e-36WOX family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  3. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  4. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]