PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | AP2 | ||||||||
Protein Properties | Length: 466aa MW: 51149.9 Da PI: 8.4614 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.6e-17 | 148 | 197 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_011089376.1 148 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 197 78*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.5E-15 | 148 | 207 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-9 | 148 | 197 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.68E-12 | 149 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.6E-17 | 149 | 205 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.477 | 149 | 205 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-31 | 149 | 211 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-6 | 240 | 284 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.73E-13 | 240 | 285 | No hit | No description |
SMART | SM00380 | 6.9E-12 | 241 | 289 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MFDLNLTVDC IGEPNTLEGQ SPATSLSSVV NGEAENVSSS NDDASSPRAS AFTFNFDILN 60 STRTDDPVLG NHDPDDLGLT STHSGLVTRE LFPVSRLGEL IRGRRQNETA DPPVDQGLRQ 120 HSIPGMAVQQ QQQVQARKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT 180 ALAAARAYDR AAIKFRGVDA DINFNISDYE EDMKQIMNLS KEEFVQLLRR QSTGFSRGTS 240 KYRGVTLHKC GRWEARMGQL LGKKAYDKAA IKCNGSEAFT NFNPSTYNVE TRSKPCKGGS 300 QHDLDLNLGI STSPPEESGR LGSLVFNTHD VQHTRTSKLH AESSATTIVG NRPLNGLPVT 360 SEHPMLWTGL NPKFVPIYEE TSSAERTASI SPQEAANWAW KMHGQARVTP NATTLCAAAS 420 SGFSSLAKTV PFDSASLIPL RVSSYPSTSP NTCPNYSQMK LYSPPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089376.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089376.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | Q9SK03 | 3e-95 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A2G9FZN3 | 1e-161 | A0A2G9FZN3_9LAMI; Uncharacterized protein | ||||
STRING | XP_009623868.1 | 1e-130 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.1 | 2e-91 | related to AP2.7 |