PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089286.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | GATA | ||||||||
Protein Properties | Length: 336aa MW: 36681.6 Da PI: 8.7843 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.1 | 1.3e-19 | 241 | 274 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C +tkTp+WR+gp g+ktLCnaCG++yr+ + XP_011089286.1 241 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGR 274 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.9E-15 | 235 | 285 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.609 | 235 | 271 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.2E-14 | 239 | 272 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.06E-16 | 240 | 287 | No hit | No description |
SuperFamily | SSF57716 | 1.43E-14 | 240 | 298 | No hit | No description |
Pfam | PF00320 | 2.0E-17 | 241 | 274 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 241 | 266 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGVVEPGNCW DAVANGVAGD EEFENILSIL DFPMESLDGD GFVEDWDISK SQSLGPIPSN 60 VLFGPPMIPN GKIDTGPPNL LPGPVAPIAA APEHKLPSTY VEASGSHMLQ QNKFVDVQES 120 GFFQTQSPVS VLESGGSCSA GKNLPIKSHN AIPVRTRSKR VRHAGINPWL LVSPWFAATS 180 TSKRTSNARK HKEARKKLSQ PSVVVKSTRD SPEKVENSLQ VSDYGEPQNV SSHRPALAKK 240 CTHCEVTKTP QWREGPLGPK TLCNACGVRY RSGRLFPEYR PAASPTFVPS LHSNSHKKVI 300 EMRSKAKQPA TKLEEPPISP QPEFVPMSSY LFDYIH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 159 | RTRSKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089286.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552412.1 | 0.0 | GATA transcription factor 11-like | ||||
TrEMBL | A0A2G9HBY5 | 1e-179 | A0A2G9HBY5_9LAMI; Uncharacterized protein | ||||
STRING | Migut.D02232.1.p | 1e-105 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3134 | 21 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 1e-47 | GATA transcription factor 11 |