PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089146.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 280aa    MW: 31302.1 Da    PI: 6.6684
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-174087148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl
   XP_011089146.1 40 RGPWTAEEDELLAAYIKREGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 87
                     89******************************99************97 PP
2Myb_DNA-binding49.97.3e-1693138148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_011089146.1  93 RGHISPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 138
                      67779*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575122No hitNo description
Gene3DG3DSA:1.10.10.607.9E-223290IPR009057Homeodomain-like
PROSITE profilePS5129415.8693587IPR017930Myb domain
SuperFamilySSF466893.67E-2937134IPR009057Homeodomain-like
SMARTSM007175.9E-133989IPR001005SANT/Myb domain
PfamPF002495.9E-154087IPR001005SANT/Myb domain
CDDcd001672.47E-104287No hitNo description
PROSITE profilePS5129425.24788142IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-2591143IPR009057Homeodomain-like
SMARTSM007173.8E-1592140IPR001005SANT/Myb domain
PfamPF002491.0E-1493138IPR001005SANT/Myb domain
CDDcd001671.14E-1197138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MRSPLQLSPS KQTPGGGGGG GCSSKKADSV ACCSNVGLKR GPWTAEEDEL LAAYIKREGE  60
GRWRTLPKKA GLLRCGKSCR LRWMNYLRPS VKRGHISPDE EDLILRLHRL LGNRWSLIAG  120
RIPGRTDNEI KNYWNTHLSK KLISQGIDPK TQKPLNPNPI DHNQKLEQCY ASSASYHHQH  180
VPFASALKDG NGMMSKGDGS INSTTNDEDE EEAAVAIRNK DLIRNKIDDI EGMMSSKDDD  240
MMMNCCAEDA FSSFLNSLIN DDVFNNQHQD DHEEEQHLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25381425108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089146.10.0transcription repressor MYB5-like
SwissprotQ388505e-83MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A022RFX32e-99A0A022RFX3_ERYGU; Uncharacterized protein
STRINGMigut.D02551.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-84myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]