PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011089068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 27343.8 Da PI: 8.9804 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.4 | 5.4e-11 | 122 | 165 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 + +GV+++ +W A I++ +k+++lg+ g+ eeAa+++++a+ XP_011089068.1 122 CVMRGVYFKN--LKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 165 5689***966..5********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.8E-5 | 122 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-8 | 123 | 168 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-4 | 125 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-6 | 126 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MAVTLPPFYV LGEPETAMVS IRRRKLLGMC SGRSSFLAPL SCAFEHGHTP ENCAESTKSV 60 SVHPLPLNDN YKPNEETTSE TGPGSSNLSA SSPPKEHLIQ QFPEIKRRKR HRRKQVENQE 120 QCVMRGVYFK NLKWQAAIKV DKKQIHLGTV GSQEEAARLY DRAAFMCGRE PNFELSEEEK 180 QELRKFKWDE FLAMTRSAIT NKKSQRRSGT VPRRKFEENE WEGEQGRNGF SASEDDALAP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011089068.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089068.1 | 1e-180 | ethylene-responsive transcription factor-like protein At4g13040 isoform X1 | ||||
TrEMBL | A0A4D8ZWT0 | 1e-110 | A0A4D8ZWT0_SALSN; Uncharacterized protein | ||||
STRING | EOX93857 | 6e-93 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6246 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-45 | ERF family protein |