PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011089038.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 537aa    MW: 57886.5 Da    PI: 6.6536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011089038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.5e-09363410455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_011089038.1 363 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 410
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575132No hitNo description
CDDcd000831.28E-10357414No hitNo description
SuperFamilySSF474599.42E-17357426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16359423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663359409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-6363410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MDKDYFMNAG IPPPQPLQFE TTLPVPWSGL SCPPEHSFLD PNSSMDHHYS SFESALSSMV  60
SSSPAAATTT SGLSNEAFVL RELIGKLSGA GSSTSFPPPA TTTTTTSSPF NDSSYRTPLN  120
SPKLQLPFLD QMNMPNLATS LPPAPPPLPA LSADPGFAER AAKFSCFGSR SFNGRTSPFG  180
VNNAELGHRS NTTLMGNGKL PRVSSSPALK QGGSPVENKN SGQHGMEIKL VNGFVSGSEK  240
KLSKLSGSGA SSNEESSVSE QIPSGENGPK TSNEMSSRKR KAVSRAKSKE NGSNSAKGGE  300
GDDDGNAKRS KPTEIGKNET KMEEEGKGGS NDESEKQKAN QKPPEPPKDY IHVRARRGQA  360
TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL  420
ASVNPGLDFN MDNLLSKDMF QPQQMYPLDS SAPTLYHHQP QQNVQQFHDT TNASTGGPLS  480
QCPVDPLPLG VQLPCTDGFS ESLPQFPAFS EDDLHSIVHM GFVNFPVNQA SDTRVER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011089038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0547251e-59KJ054725.1 Sesamum indicum clone TilSSR_25926 microsatellite Sesame_25926 sequence.
GenBankKJ0637661e-59KJ063766.1 Sesamum indicum clone TilSSR_34967 microsatellite Sesame_34967 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089038.10.0transcription factor bHLH62 isoform X2
TrEMBLA0A2G9GX750.0A0A2G9GX75_9LAMI; Uncharacterized protein
STRINGEMJ023811e-158(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-84bHLH family protein