PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088898.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NF-YB | ||||||||
Protein Properties | Length: 157aa MW: 17782 Da PI: 6.0767 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 39.6 | 1.3e-12 | 17 | 109 | 6 | 93 |
NF-YB 6 rflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 ++lP + v r++k+ l + ++ is +d+ + e + fi ++++ a+d c++ +r+ in++d++ al ++ f +++ pl++ l+++r+ XP_011088898.1 17 EELPKTIVRRVVKEKLSQlatDSEISvlRDSLQAFCESARIFIHYLSATANDICRESNRQIINAEDVFKALEEIEFAEFIGPLRACLEEFRQK 109 5789999999999987651114555533788999999999***************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.6E-28 | 11 | 149 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.5E-8 | 18 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.67E-22 | 19 | 131 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MAEKDKELTE KVVPEAEELP KTIVRRVVKE KLSQLATDSE ISVLRDSLQA FCESARIFIH 60 YLSATANDIC RESNRQIINA EDVFKALEEI EFAEFIGPLR ACLEEFRQKN PGRKVASSGS 120 SKAKDTSKNA KRKPPAQSEG RKKRREVESN RDEDDAD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 144 | KRKPPAQSEGRKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088898.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088898.1 | 1e-109 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A2G9HT90 | 1e-80 | A0A2G9HT90_9LAMI; Class 2 transcription repressor NC2, beta subunit (Dr1) | ||||
STRING | Migut.D02442.1.p | 2e-80 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10161 | 24 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-38 | nuclear factor Y, subunit B11 |