PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088885.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bZIP

Protein Properties

Length: 472aa MW: 52570 Da PI: 7.1735

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088885.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	166	203	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 + k rr+++NReAAr+sR+RKka++++Le L++ XP_011088885.1 166 PEKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 203 56889*************************86655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-7	164	229	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.048	166	210	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-7	166	208	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.64E-7	168	211	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.0E-7	169	212	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	8.5E-33	249	324	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MASQRLGEAA LSESGPSHHH HHIPYSLPHM LHHPNTSFIN QEGSAFDFGE LEEAIVLQGV 60 KINNDETKQP LYTTVRPAAT LEMFPSWPMR FQQHTPRGSS KSGEESTDSG SAVNTLSTTR 120 LEPDSPISRK TSSDHRLPPP QMDTGSGVDS PRTGGSQTQP AAKQAPEKTL RRLAQNREAA 180 RKSRLRKKAY VQQLESSRIR LTQLEQDLQR ARSQGLFLGG GGVAGGNISS GGAIFDMEYA 240 RWLEDDHRHM SELRTALQAH LSDGDLRVIV DGYIAHYDEI FRLKGVAAKS DVFHLITGMW 300 TTPAERCFLW MGGFRPSDLI KMLITQLDPL TEQQVMGIYG LQQSSQQAEE ALSQGLEQLQ 360 QSLIDTIANG SINDSMHHMA VALGKLSNLE GFVRQADNLR QQTLHQLRRI LTVRQAARCF 420 LVIGEYYGRL RALSSLWASR PRETLIVDDS SCQTTTTDLQ MVQSSQNQFS NF

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MASQRLGEAA LSESGPSHHH HHIPYSLPHM LHHPNTSFIN QEGSAFDFGE LEEAIVLQGV  60
KINNDETKQP LYTTVRPAAT LEMFPSWPMR FQQHTPRGSS KSGEESTDSG SAVNTLSTTR  120
LEPDSPISRK TSSDHRLPPP QMDTGSGVDS PRTGGSQTQP AAKQAPEKTL RRLAQNREAA  180
RKSRLRKKAY VQQLESSRIR LTQLEQDLQR ARSQGLFLGG GGVAGGNISS GGAIFDMEYA  240
RWLEDDHRHM SELRTALQAH LSDGDLRVIV DGYIAHYDEI FRLKGVAAKS DVFHLITGMW  300
TTPAERCFLW MGGFRPSDLI KMLITQLDPL TEQQVMGIYG LQQSSQQAEE ALSQGLEQLQ  360
QSLIDTIANG SINDSMHHMA VALGKLSNLE GFVRQADNLR QQTLHQLRRI LTVRQAARCF  420
LVIGEYYGRL RALSSLWASR PRETLIVDDS SCQTTTTDLQ MVQSSQNQFS NF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088885.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552199.1	0.0	transcription factor TGA9 isoform X3
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2G9I6Q3	0.0	A0A2G9I6Q3_9LAMI; Transcriptional activator of the JUN family
STRING	EOY33449	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]