PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 285aa MW: 30745.5 Da PI: 4.3763 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2e-05 | 260 | 282 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+ksF++ L++H + H XP_011088838.1 260 SCKSCSKSFTSENALQSHAKAkH 282 7*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.74E-5 | 253 | 281 | No hit | No description |
PROSITE profile | PS50157 | 11.78 | 259 | 285 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 261 | 282 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MEFWGVEVKA GQPLKVQPEF GKLIHISQAA LGEVKDVKGA KHVPLRLKVD SKNFIIGALS 60 AEDRAQLMFD LVFERDFELS HDWKNGSVYF MGYVADDPVS DGEEFSDDFE DESEDEPVDA 120 LENGKVKPKS GDVKAAKVAA AKIGNKEEDQ SDSDDDEDDI GSDSDDEMAL DGEDSSDVSG 180 EEDEDDEDDS SEEELPKKSK KRAAEQETPV PAKKAKSSTP DKSGNKKGQA GTPFPSKPAG 240 KTPTGNKSKE QTPKSGGQLS CKSCSKSFTS ENALQSHAKA KHGGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088838.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088838.1 | 0.0 | histone deacetylase HDT1 isoform X2 | ||||
TrEMBL | A0A2G9HM67 | 7e-95 | A0A2G9HM67_9LAMI; Histone deacetylase | ||||
STRING | Migut.D02332.1.p | 8e-74 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 6e-36 | histone deacetylase 3 |