PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | FAR1 | ||||||||
Protein Properties | Length: 786aa MW: 89805.2 Da PI: 6.8157 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 100 | 2.4e-31 | 79 | 170 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk +++gkw+v+ +++eHnHel+p XP_011088830.1 79 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIQDSGKWVVSGFVKEHNHELVP 170 9***************************************998888545677889***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-29 | 79 | 170 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.4E-31 | 291 | 383 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 7.2E-12 | 559 | 605 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.263 | 571 | 607 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.2E-9 | 582 | 609 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 786 aa Download sequence Send to blast |
MENGVIEFDI GLGGGDDAID IEPPNDDGEM PDGSPNDANS LGSGSGDTAF AQSYIPEGDL 60 DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR KDGAIIQRSF VCAKEGFRNL 120 NEKRTKDREI KRPRTVTRVG CKASLSVKIQ DSGKWVVSGF VKEHNHELVP PDQVHCLRSH 180 RQISGPAKTL IDTLQAAGMG PRRIMSVLIK EYGGISKVGF TEVDCRNYMR NNRQRSMEGD 240 IQLLLDYLKQ KQAENPSFFY AVQGDEDQYT GNVFWADPKA RTDYSYFGDT VTFDTTYRSN 300 RYRLPFVPFT GLNHHGQPVL FGCAFLINES EASFVWLFKT WLAAMSGRSP VSITTEHDTV 360 IRSAIMQVFP NTRHRFCKWH IFKQCQEKLS HVLLKHPHFE AALHKCVNLS ESTEEFESCW 420 HSLAEKYDLR DHKWLQAIYV DRRQWVPVYL HDTFFAEMSI TQRSDSMNSY FDGYVNASTN 480 LNQFFKLYEK ALESRHEKEV KADFDTMNTS AVLKTPSPME KQASDFYTRK IFMRFQEELV 540 STLTFMASKV EDDGEVTTYR VAKFGEDHKA YHVRFNVLEM RATCSCQMFE FSGLLCRHVL 600 AVFRVTNVLT LPSHYILKRW TRNAKSSVVL EERVTDPFNS YLESHTVRYN TLRHEAFKFV 660 DEGAESVESY TIAMSALTEA SKKVAVAIKN EGKPSISNGP MRDVSARGRI WPNHCAGEGQ 720 GSSAQQLSED DMDQKINELS TDLERANRKC EVYRTNLLSL LKDIEDHKQR LSIEVQNIKL 780 SMKDGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088830.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020552571.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_020552572.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_020552573.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2G9G6P2 | 0.0 | A0A2G9G6P2_9LAMI; Uncharacterized protein | ||||
STRING | EMJ02154 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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