PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088829.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

FAR1

Protein Properties

Length: 786aa MW: 89805.2 Da PI: 6.8157

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100	2.4e-31	79	170	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk +++gkw+v+ +++eHnHel+p XP_011088829.1 79 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIQDSGKWVVSGFVKEHNHELVP 170 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-29	79	170	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-31	291	383	IPR018289	MULE transposase domain
Pfam	PF04434	7.2E-12	559	605	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.263	571	607	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	582	609	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence Send to blast
MENGVIEFDI GLGGGDDAID IEPPNDDGEM PDGSPNDANS LGSGSGDTAF AQSYIPEGDL 60 DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR KDGAIIQRSF VCAKEGFRNL 120 NEKRTKDREI KRPRTVTRVG CKASLSVKIQ DSGKWVVSGF VKEHNHELVP PDQVHCLRSH 180 RQISGPAKTL IDTLQAAGMG PRRIMSVLIK EYGGISKVGF TEVDCRNYMR NNRQRSMEGD 240 IQLLLDYLKQ KQAENPSFFY AVQGDEDQYT GNVFWADPKA RTDYSYFGDT VTFDTTYRSN 300 RYRLPFVPFT GLNHHGQPVL FGCAFLINES EASFVWLFKT WLAAMSGRSP VSITTEHDTV 360 IRSAIMQVFP NTRHRFCKWH IFKQCQEKLS HVLLKHPHFE AALHKCVNLS ESTEEFESCW 420 HSLAEKYDLR DHKWLQAIYV DRRQWVPVYL HDTFFAEMSI TQRSDSMNSY FDGYVNASTN 480 LNQFFKLYEK ALESRHEKEV KADFDTMNTS AVLKTPSPME KQASDFYTRK IFMRFQEELV 540 STLTFMASKV EDDGEVTTYR VAKFGEDHKA YHVRFNVLEM RATCSCQMFE FSGLLCRHVL 600 AVFRVTNVLT LPSHYILKRW TRNAKSSVVL EERVTDPFNS YLESHTVRYN TLRHEAFKFV 660 DEGAESVESY TIAMSALTEA SKKVAVAIKN EGKPSISNGP MRDVSARGRI WPNHCAGEGQ 720 GSSAQQLSED DMDQKINELS TDLERANRKC EVYRTNLLSL LKDIEDHKQR LSIEVQNIKL 780 SMKDGL

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence Send to blast

MENGVIEFDI GLGGGDDAID IEPPNDDGEM PDGSPNDANS LGSGSGDTAF AQSYIPEGDL  60
DLEPYEGMEF ESEEAAKAFY NSYARRVGFS TRVSSSRRSR KDGAIIQRSF VCAKEGFRNL  120
NEKRTKDREI KRPRTVTRVG CKASLSVKIQ DSGKWVVSGF VKEHNHELVP PDQVHCLRSH  180
RQISGPAKTL IDTLQAAGMG PRRIMSVLIK EYGGISKVGF TEVDCRNYMR NNRQRSMEGD  240
IQLLLDYLKQ KQAENPSFFY AVQGDEDQYT GNVFWADPKA RTDYSYFGDT VTFDTTYRSN  300
RYRLPFVPFT GLNHHGQPVL FGCAFLINES EASFVWLFKT WLAAMSGRSP VSITTEHDTV  360
IRSAIMQVFP NTRHRFCKWH IFKQCQEKLS HVLLKHPHFE AALHKCVNLS ESTEEFESCW  420
HSLAEKYDLR DHKWLQAIYV DRRQWVPVYL HDTFFAEMSI TQRSDSMNSY FDGYVNASTN  480
LNQFFKLYEK ALESRHEKEV KADFDTMNTS AVLKTPSPME KQASDFYTRK IFMRFQEELV  540
STLTFMASKV EDDGEVTTYR VAKFGEDHKA YHVRFNVLEM RATCSCQMFE FSGLLCRHVL  600
AVFRVTNVLT LPSHYILKRW TRNAKSSVVL EERVTDPFNS YLESHTVRYN TLRHEAFKFV  660
DEGAESVESY TIAMSALTEA SKKVAVAIKN EGKPSISNGP MRDVSARGRI WPNHCAGEGQ  720
GSSAQQLSED DMDQKINELS TDLERANRKC EVYRTNLLSL LKDIEDHKQR LSIEVQNIKL  780
SMKDGL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088829.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552571.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552572.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552573.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G9G6P2	0.0	A0A2G9G6P2_9LAMI; Uncharacterized protein
STRING	EMJ02154	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]