PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088777.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 219aa    MW: 24799 Da    PI: 9.1026
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.62.2e-15150185134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+nCg ++  Tp++Rrgp g ++LCnaCGl+++ +g
  XP_011088777.1 150 CTNCGISSndTPMMRRGPAGMRSLCNACGLFWANNG 185
                     *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513209.6883267IPR010399Tify domain
PfamPF062031.6E-1387127IPR010402CCT domain
PROSITE profilePS5101712.10487129IPR010402CCT domain
SMARTSM004019.8E-11144197IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.33144207IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-11146201No hitNo description
CDDcd002024.54E-13149192No hitNo description
Gene3DG3DSA:3.30.50.103.0E-16149191IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440150177IPR000679Zinc finger, GATA-type
PfamPF003204.7E-13150185IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MHTSDQPLNV NAAGDESVGH SIAGNELIQH NAADAPHRVT LSFWDHVFIF DSVPYEKLQT  60
VLLLLGGFAF DRANKDATHH KCKDPKREEH VNKYRLKREE RCFEKRIRYN VRRAVALKMK  120
RKNGRFACKD SGQTSMEINR VDESPPQLAC TNCGISSNDT PMMRRGPAGM RSLCNACGLF  180
WANNGIMRDA SKTFKYSHIL HNFINSKDHS NGSDHETAI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088777.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088777.11e-166GATA transcription factor 25-like
TrEMBLA0A068TXX61e-52A0A068TXX6_COFCA; Uncharacterized protein
STRINGMigut.B00065.1.p2e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1979333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.24e-47GATA-type zinc finger protein with TIFY domain