PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011088705.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Nin-like

Protein Properties

Length: 930aa MW: 103539 Da PI: 7.0048

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011088705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	628	678	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l+kyF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ XP_011088705.1 628 EKTISLQVLRKYFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRKIKKV 678 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.779	617	698	IPR003035	RWP-RK domain
Pfam	PF02042	3.4E-24	630	678	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.94E-23	830	917	No hit	No description
SMART	SM00666	2.5E-25	831	915	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.3E-22	831	912	No hit	No description
PROSITE profile	PS51745	21.29	831	915	IPR000270	PB1 domain
CDD	cd06407	1.85E-40	832	914	No hit	No description
Pfam	PF00564	8.6E-18	832	914	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MEDGAFTPNT MLSESDSPID FNLMDQLLYD GFWLETTDES SFWHPCPTST TTSTDFTSSS 60 FVFPTSHTNI HTSNTTPHQD TSLKQSHKSV TFGPPSLTYP LMDDFSQNHQ PSLPLVSSNQ 120 STNFLVQDTQ VSRRLWVGPN TSPIRNVSLK KRLVQAINHL KDSIRDKDVL IQIWVPVKKG 180 GRQVLTTNNQ PFSLNPNCKN LADYRDVSRS YQFAADEGSK EFTGLPGRVF LNKLPEWTPD 240 VRFFKREEYP RVNHAQQYDV RGSLALPVFE QGSGNCLGVV EIVTTSQKVN YRPELENVCK 300 ALEAVDLKSS DILNPPNIED RNESYQAALM EIRNVLKCVC DTHKLPLAQT WAPCVQQGKG 360 GCRHSDENYT QCVSTVDTAC YVADQQVSTF HEACSEHHLL KGEGVAGKAF LTNQPCFAED 420 ITAFSKTEYP LAHHARVFNL CAAVAIRLRS TYTGAADFVL ELFLPLNCKD VEDQRWMLDS 480 LSSVIQRTCQ SLRVVTDQEL ARETSGRGIA GKSDGENHPR LVTSPSEEPS PVASSCIRHV 540 VDSQHKGKRI AASLGHHKEE LGEFKVTTQW DNSGSDFHYS PAFSEHEQPQ QDSGPKPSGD 600 VTGNFFLAGG DLPVGPKTNP EKRRTKIEKT ISLQVLRKYF AGSLKDAAKN IGVCPTTLKR 660 ICRQHGITRW PSRKIKKVGH SLRKLQLVID SVQGAEGSIQ LXSHLQMSEM NDQLQQVNTQ 720 PVGTLISPVT TASKSPSSSG SHSSSSSYCC STGVKQSSFP VTGSSSGEAL SAEHTGEMLK 780 RARSDAELHD LGQEETKLLV RSYSHKIFSN HAPNETPQVP KNSSKVYDVG MFRVKATFGE 840 EKIRLSLQQH WGFIDLQQEV FRRFNLDTKS SRFDLKYLDD DSEWVLLTCD ADLEECIDIH 900 RSSKNRTIKL SLNQVYNPSL GSSFGSNGPY

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MEDGAFTPNT MLSESDSPID FNLMDQLLYD GFWLETTDES SFWHPCPTST TTSTDFTSSS  60
FVFPTSHTNI HTSNTTPHQD TSLKQSHKSV TFGPPSLTYP LMDDFSQNHQ PSLPLVSSNQ  120
STNFLVQDTQ VSRRLWVGPN TSPIRNVSLK KRLVQAINHL KDSIRDKDVL IQIWVPVKKG  180
GRQVLTTNNQ PFSLNPNCKN LADYRDVSRS YQFAADEGSK EFTGLPGRVF LNKLPEWTPD  240
VRFFKREEYP RVNHAQQYDV RGSLALPVFE QGSGNCLGVV EIVTTSQKVN YRPELENVCK  300
ALEAVDLKSS DILNPPNIED RNESYQAALM EIRNVLKCVC DTHKLPLAQT WAPCVQQGKG  360
GCRHSDENYT QCVSTVDTAC YVADQQVSTF HEACSEHHLL KGEGVAGKAF LTNQPCFAED  420
ITAFSKTEYP LAHHARVFNL CAAVAIRLRS TYTGAADFVL ELFLPLNCKD VEDQRWMLDS  480
LSSVIQRTCQ SLRVVTDQEL ARETSGRGIA GKSDGENHPR LVTSPSEEPS PVASSCIRHV  540
VDSQHKGKRI AASLGHHKEE LGEFKVTTQW DNSGSDFHYS PAFSEHEQPQ QDSGPKPSGD  600
VTGNFFLAGG DLPVGPKTNP EKRRTKIEKT ISLQVLRKYF AGSLKDAAKN IGVCPTTLKR  660
ICRQHGITRW PSRKIKKVGH SLRKLQLVID SVQGAEGSIQ LXSHLQMSEM NDQLQQVNTQ  720
PVGTLISPVT TASKSPSSSG SHSSSSSYCC STGVKQSSFP VTGSSSGEAL SAEHTGEMLK  780
RARSDAELHD LGQEETKLLV RSYSHKIFSN HAPNETPQVP KNSSKVYDVG MFRVKATFGE  840
EKIRLSLQQH WGFIDLQQEV FRRFNLDTKS SRFDLKYLDD DSEWVLLTCD ADLEECIDIH  900
RSSKNRTIKL SLNQVYNPSL GSSFGSNGPY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011088705.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020551595.1	0.0	LOW QUALITY PROTEIN: protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A2G9HB62	0.0	A0A2G9HB62_9LAMI; Uncharacterized protein
STRING	Migut.B00011.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein