 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_011088552.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 305aa MW: 34504.9 Da PI: 10.2673 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_011088552.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 327.2 | 4.5e-100 | 1 | 305 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84
md++g+re r++ yy+ +++ + +++ ++ + erda+i+er+ al+ekk a++erd+a +qrd+a+a+r++al erdn+++al
XP_011088552.1 1 MDENGQREsrRHRVdYYKwnmisqyqTKEQNAYHVNAKISMLCDERDAAIQERDRALAEKKVALNERDVAIQQRDAAIADRDNALRERDNAIAAL 95
9999999998888899*999998875225666789999988888*************************************************** PP
GAGA_bind 85 llvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvk 179
+++e +++ +l+++ + l+ t++ + q + +sa +l e+ +++alpi+ +++a++++++k +++ +++k+k +k+k+k+e+ +++ +
XP_011088552.1 96 QFHESTMNAVLGNNARGLKRTNHPRNQQA----NNVKSARNLGERCITNALPISAIPSDAEKEERTKVNKNITSKKTKSPRKVKRKGEDLNRNIT 186
******99999888888888877775554....445566778899999***************************************99999999 PP
GAGA_bind 180 kesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
+e+ skae++ +++ ++ +s++est+PvP+CsCtGa+rqCYkWGnGGWqS+CCtt+iSvyPLP+ +++r+aR++grKmS+++f++lL ++a
XP_011088552.1 187 TEG----SKAEWEAQEFgSISPISFNESTMPVPICSCTGAPRQCYKWGNGGWQSSCCTTSISVYPLPQIPNKRHARMGGRKMSGSVFSRLLTRMA 277
988....89********88**************************************************************************** PP
GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
+ G+dls p+DLk++WAkHGtn+++ti+
XP_011088552.1 278 SAGHDLSIPIDLKNYWAKHGTNRYITIK 305
***************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MDENGQRESR RHRVDYYKWN MISQYQTKEQ NAYHVNAKIS MLCDERDAAI QERDRALAEK 60
KVALNERDVA IQQRDAAIAD RDNALRERDN AIAALQFHES TMNAVLGNNA RGLKRTNHPR 120
NQQANNVKSA RNLGERCITN ALPISAIPSD AEKEERTKVN KNITSKKTKS PRKVKRKGED 180
LNRNITTEGS KAEWEAQEFG SISPISFNES TMPVPICSCT GAPRQCYKWG NGGWQSSCCT 240
TSISVYPLPQ IPNKRHARMG GRKMSGSVFS RLLTRMASAG HDLSIPIDLK NYWAKHGTNR 300
YITIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
