PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088544.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 714aa    MW: 79314.2 Da    PI: 6.4549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08129153526
                     --SGGGGTS...--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                     +C+  a++G    C+yGdrC+F+H+
  XP_011088544.1 129 ICPEVAKSGkvsSCPYGDRCRFNHD 153
                     599999999999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.064124154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.197129155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4129155IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-6129153IPR000571Zinc finger, CCCH-type
SMARTSM0035634165190IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.925168193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.707.8E-75358601IPR013785Aldolase-type TIM barrel
CDDcd028012.55E-93362597No hitNo description
SuperFamilySSF513951.47E-65362675No hitNo description
PfamPF012074.6E-54365622IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360446464IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MLVFFPCLHF YISTATILHS LPQTLPPPAM ADPSLLDNTL NPVSAAQPPP LDEAHPTPDE  60
LVAKAIAPVK RHFLRPPPVR TCDGNNSSKA DEGAAAQKDD ASAPILKEKK SKRQLKRERR  120
QEQKSALHIC PEVAKSGKVS SCPYGDRCRF NHDVEAFKAQ KPDDLDGMCP FLTTKGPCPY  180
GLACRFAGTH KDDNGEAANE TINGDERSSE MNVLKKDVQK LLWKKNRMKF PKADAALELL  240
GLVGQGKKKK MVENENDDKI VSNDSGDVDG NGCCRATGDS SNDLDCAAEV LEEGKPDEAD  300
TTDELRPPKK TKSSIDETCS VLVNDGCKQN EPETCIENIV EDNDKCLKLH PREKKLIDFR  360
EKLYLAPLTT VGNLPFRQVC KVLGADVTCG EMAMCTNLLQ GQASEWALLR RHSSEDLFGV  420
QICGAYPDTV ARTVELIEQN CTVDFIDINM GCPIDIVVNK GAGSALLMKP TRMKSVVEAS  480
SRAVDIPVTI KVRTGFYEGK NRIDSLIADI GNWGATAVTI HGRTRQQRYS KLANWEYIYQ  540
CARAAPSSLQ VLGNGDVFSY LDWNSHKSDC PELSTCMIAR GALIKPWIFT EIKEQRHWDI  600
SSGQRLDILK DYVRFGLQHW GSDSKGVETT RHFLLEWLSY TCRYIPIGLL DNIPQRINWR  660
PPSYFGRDDL ETLMASESAA DWIRISEMLL GKVPYGFTFA PKHKSNAYDS AENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A9e-2835959327257tRNA-dihydrouridine synthase B
6ei9_B9e-2835959327257tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088544.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088544.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X2
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2G9G3E20.0A0A2G9G3E2_9LAMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGMigut.B00123.1.p0.0(Erythranthe guttata)
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]