PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088543.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 715aa    MW: 79443.3 Da    PI: 6.3544
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088543.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-08129153526
                     --SGGGGTS...--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                     +C+  a++G    C+yGdrC+F+H+
  XP_011088543.1 129 ICPEVAKSGkvsSCPYGDRCRFNHD 153
                     599999999999************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.064124154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.197129155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4129155IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-6129153IPR000571Zinc finger, CCCH-type
SMARTSM0035634165190IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.925168193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.707.9E-75359602IPR013785Aldolase-type TIM barrel
SuperFamilySSF513951.47E-65363676No hitNo description
CDDcd028012.58E-93363598No hitNo description
PfamPF012074.6E-54366623IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360447465IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MLVFFPCLHF YISTATILHS LPQTLPPPAM ADPSLLDNTL NPVSAAQPPP LDEAHPTPDE  60
LVAKAIAPVK RHFLRPPPVR TCDGNNSSKA DEGAAAQKDD ASAPILKEKK SKRQLKRERR  120
QEQKSALHIC PEVAKSGKVS SCPYGDRCRF NHDVEAFKAQ KPDDLDGMCP FLTTKGPCPY  180
GLACRFAGTH KDDNGEAANE TINGDERSSE MNVLKKDVQK LLWKKNRMKF PKADAALELL  240
GLVGQGKKKK MVENENDDKI VSNDSGDVDG NGCCRATGDS SNDLDCAAEV LEEGKPDEAD  300
TTDELRPPKK TKSSIDETCS VLVNDEGCKQ NEPETCIENI VEDNDKCLKL HPREKKLIDF  360
REKLYLAPLT TVGNLPFRQV CKVLGADVTC GEMAMCTNLL QGQASEWALL RRHSSEDLFG  420
VQICGAYPDT VARTVELIEQ NCTVDFIDIN MGCPIDIVVN KGAGSALLMK PTRMKSVVEA  480
SSRAVDIPVT IKVRTGFYEG KNRIDSLIAD IGNWGATAVT IHGRTRQQRY SKLANWEYIY  540
QCARAAPSSL QVLGNGDVFS YLDWNSHKSD CPELSTCMIA RGALIKPWIF TEIKEQRHWD  600
ISSGQRLDIL KDYVRFGLQH WGSDSKGVET TRHFLLEWLS YTCRYIPIGL LDNIPQRINW  660
RPPSYFGRDD LETLMASESA ADWIRISEML LGKVPYGFTF APKHKSNAYD SAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A9e-2836059427257tRNA-dihydrouridine synthase B
6ei9_B9e-2836059427257tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088543.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088543.10.0tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
SwissprotQ9T0J60.0DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A2G9G3E20.0A0A2G9G3E2_9LAMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGMigut.B00123.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80391923
Publications ? help Back to Top
  1. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]