PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011088488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | DBB | ||||||||
Protein Properties | Length: 211aa MW: 23620.6 Da PI: 6.031 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.9 | 3.6e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ +++fC ++ lC++C ++ H XP_011088488.1 4 LCDVCESAAAIIFCAADEAALCRSCDDKVH 33 7*************************9998 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H XP_011088488.1 52 EVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 789***************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.4E-7 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.997 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.33E-5 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 1.2E-5 | 3 | 41 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.944 | 51 | 96 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.6E-11 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.8E-6 | 52 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.33E-6 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MRTLCDVCES AAAIIFCAAD EAALCRSCDD KVHMCNKLAS RHVRVGLAEP SEVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEFPGDKPGS VDEPGSQRVH 120 LGEAKREPIQ MSSLRAKENQ QNHRDSPEPI LGNNIDSHEK MENQLIDLNS RPQRVHGQTP 180 GNQDRLDTLA YNNHESESVV PDGYLKREPE K |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011088488.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC239650 | 4e-32 | AC239650.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-23c6 map 1, complete sequence. | |||
GenBank | HG975440 | 4e-32 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. | |||
GenBank | HG975513 | 4e-32 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088488.1 | 1e-156 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551620.1 | 1e-156 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551621.1 | 1e-156 | B-box zinc finger protein 19 | ||||
Refseq | XP_020551622.1 | 1e-156 | B-box zinc finger protein 19 | ||||
Swissprot | C0SVM5 | 9e-82 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2G9G0M3 | 1e-122 | A0A2G9G0M3_9LAMI; Uncharacterized protein | ||||
STRING | Migut.B00176.1.p | 1e-119 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3175 | 23 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 2e-70 | DBB family protein |