PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088480.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family GATA
Protein Properties Length: 323aa    MW: 35741.1 Da    PI: 7.2225
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.3e-18239272134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++C++ kTp+WR gp g+ktLCnaCG+++++ +
  XP_011088480.1 239 CTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 272
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-784322IPR016679Transcription factor, GATA, plant
SMARTSM004018.7E-13233287IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.53233269IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-13237296No hitNo description
Gene3DG3DSA:3.30.50.108.5E-14238270IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.25E-13238287No hitNo description
PfamPF003202.6E-16239272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MECIEARALK SSFLSQMAMK TTSQVFYNDD VWCLTGINNV ASDDFPVEDL LNLDFSDKEF  60
QDGFFSQEDD VSQKASSYNS SSIFSGTDDF DSLSAGELAV PVDDLENLEW LSQFVDDSTS  120
GLSLLCPAGS FTSNIGTNSG KRVDPVNRPP QNIRAPCFPM RVPSKARSKR SRPNGRPWTL  180
ASPPLSSADS SSTSSSSLGS SSVSPFIFTN PVLDTEWFSS VEKPPAKKQK RKPXXXXRCT  240
HCQVQKTPQW RTGPLGPKTL CNACGVRFKS GRLFPEYRPA CSPTFSQEMH SNSHRKVLEM  300
RRKKEIGEET EPGLTRVVQS MSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088480.20.0GATA transcription factor 5-like
RefseqXP_020551667.10.0GATA transcription factor 5-like
TrEMBLA0A2G9GRK71e-160A0A2G9GRK7_9LAMI; GATA transcription factor
STRINGMigut.B00182.1.p1e-138(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-65GATA transcription factor 5