PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011088301.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family G2-like
Protein Properties Length: 381aa    MW: 42865.6 Da    PI: 7.6919
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011088301.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.81e-32268323156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+peLH+rFv+a++qLGG++ AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  XP_011088301.1 268 KQRRCWSPELHRRFVNALQQLGGAQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 323
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.932265325IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-30266326IPR009057Homeodomain-like
SuperFamilySSF466894.66E-18266326IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-27268323IPR006447Myb domain, plants
PfamPF002498.4E-8270321IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGSLIPPELS LDSRFSSKPY VHKNIGDFIA EVSRIHSASD KILKLEDYVN RLQDEMKKID  60
AFKRELPLCM LLLSDAIVTM KEELAQCKKS NVEPVLEEFI PLKKSCTDDK DDKVESSKEN  120
NISSRDKMNW MSSVQLWNSD NHPNCPSTDF SNNKPILKLD KNKQIMEEEI TRPAMDNLFQ  180
SSKSRTVLRA FVPFKGCNNF PVMTVRKEDR DELPVPGLSL CTPEIKSSRE EISCIGFGPK  240
FSSSKSVSSP TTNVEANLKA AQQQSARKQR RCWSPELHRR FVNALQQLGG AQAATPKQIR  300
ELMQVDGLTN DEVKSHLQKY RLHTRRVTTK ASTTQPVGLW MPQQQCGESL KHSNSQSASP  360
EGPLQLAGSC HGGDSIEDED D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-14268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-14268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-14268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-14268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-14268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-14268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-14268321255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-14268321255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011088301.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1472194e-46EF147219.1 Populus trichocarpa clone WS01229_I10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088301.10.0myb family transcription factor EFM isoform X1
TrEMBLA0A2G9H9I81e-171A0A2G9H9I8_9LAMI; Uncharacterized protein
STRINGMigut.B00308.1.p1e-152(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43612443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-43G2-like family protein